- This repository contains the scripts to reproduce the real-world illustration of the publication entitled: Weighted metrics are required when evaluating the performance of prediction models in nested case-control cohorts.
- v.0.0
- Summary of set up:
The results in the publication can be reproduced with the script: Real-world illustration/2023_03_03 RW1 Realworld illustration.R
This script loads two auxilliary scripts:
Auxilliary Scripts/2023_03_03 Weighted performance metrics functions.R : This script contains functions to run all weighted performance metrics.
Auxilliary Scripts/2023_03_07 NCC cohorts functions.R: This script contains functions to derive NCC cohorts and evaluate them using weighted metrics.
- Configuration:
Versions of R and R packages are mentioned in the original publication.
- Dependencies:
All R packages needed are in script:
Real-world illustration/2023_03_03 RW1 Realworld illustration.R
- Database configuration:
The data used for this real-world illustration are stored at the Dermatology Department of the Erasmus Medical Center and has protected access.
- Deployment instructions:
Run Real-world illustration/2023_03_03 RW1 Realworld illustration.R
- Code+Writing tests: Barbara Rentroia Pacheco
- Code review: Domenico Bellomo
- Repo owner or admin: Barbara Rentroia Pacheco