Pinned Repositories
fastSave
Save and load your R sessions faster using parallel compression
hogsvdR
Higher-Order Generalized Singular Value Decomposition R package
nbHelpers
A package with a collection of helper functions for bioinformatics analyses
scAlleleCount
umapWrap
Shell and R wrapper scripts for Uniform Manifold Approximation and Projection (lmcinnes/umap) method
antenna
pyro-cov
Pyro models of SARS-CoV-2 variants
sctools
Utilities for large scale distributed single cell data processing
conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
barkasn's Repositories
barkasn/fastSave
Save and load your R sessions faster using parallel compression
barkasn/hogsvdR
Higher-Order Generalized Singular Value Decomposition R package
barkasn/umapWrap
Shell and R wrapper scripts for Uniform Manifold Approximation and Projection (lmcinnes/umap) method
barkasn/nbHelpers
A package with a collection of helper functions for bioinformatics analyses
barkasn/scAlleleCount
barkasn/CBsplitter
Single-cell bam file splitter into clusters
barkasn/arrayline
barkasn/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
barkasn/covid19-autopsy
barkasn/dcp-community
HCA Data Coordination Platform community content
barkasn/hommap
Precalculated Ensembl Gene Homology Mapping
barkasn/HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
barkasn/nbpyhelp
A collection of helper functions for python
barkasn/Rjnmf
R implementation of Joint Non-negative Matrix Factorisation
barkasn/skylab
Secondary analysis pipelines
barkasn/Testathon-2020
Repo For the WDL Testathon held February 18 - 19, 2020
barkasn/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
barkasn/work_pipelines
barkasn/zarr2csv
zarr2csv