Pinned Repositories
any2fasta
Convert various sequence formats to FASTA
awesome
:sunglasses: Curated list of awesome lists
awesome-R
A curated list of awesome R packages, frameworks and software.
barrantesisrael.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
canu
A single molecule sequence assembler for genomes large and small.
Dual_RNAseq_Hsapiens_Spyogenes_IAV
Dual_RNAseq_review_analysis
general-scripts
General purpose scripts
mbt.microbiome.2021
Scripts and tutorials for the analysis of microbiome data (UMR MBT Praktikum)
repromicrobiome2021
barrantesisrael's Repositories
barrantesisrael/repromicrobiome2021
barrantesisrael/any2fasta
Convert various sequence formats to FASTA
barrantesisrael/awesome
:sunglasses: Curated list of awesome lists
barrantesisrael/awesome-R
A curated list of awesome R packages, frameworks and software.
barrantesisrael/barrantesisrael.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
barrantesisrael/canu
A single molecule sequence assembler for genomes large and small.
barrantesisrael/Dual_RNAseq_Hsapiens_Spyogenes_IAV
barrantesisrael/Dual_RNAseq_review_analysis
barrantesisrael/mbt.microbiome.2021
Scripts and tutorials for the analysis of microbiome data (UMR MBT Praktikum)
barrantesisrael/gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
barrantesisrael/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
barrantesisrael/isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
barrantesisrael/kraken
Kraken taxonomic sequence classification system
barrantesisrael/mbtmicrobiome2023
barrantesisrael/MegaGO
Calculate semantic distance for sets of Gene Ontology terms
barrantesisrael/MicroArray_Affymetrix_Analysis
barrantesisrael/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
barrantesisrael/neptune
Neptune: Genomic Signature Discovery
barrantesisrael/oneliners
Useful bash one-liners for bioinformatics.
barrantesisrael/panito
Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
barrantesisrael/piggy
Pipeline for analysing intergenic regions in bacteria
barrantesisrael/pnew202401
barrantesisrael/Roary
Rapid large-scale prokaryote pan genome analysis
barrantesisrael/Scoary
Pan-genome wide association studies
barrantesisrael/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
barrantesisrael/snp-dists
Pairwise SNP distance matrix from a FASTA sequence alignment
barrantesisrael/starter-academic
barrantesisrael/test.github.io
README
barrantesisrael/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
barrantesisrael/umr.praktikum
Repository of scripts and tutorials for analyzing microbiome data (UMR Praktikum 2020).