This package provides a MacOS X graphical user interface for running the breseq pipeline for predicting mutations in microbial genomes.
Currently, you must install breseq on your own and make sure that it and its prerequisites (R and bowtie2) are all in your $PATH to use breseq-gui.
The easiest way to do this if you are not familiar with the command line is to use these directions in the Terminal to install BioConda and then install the breseq recipe. This will automatically install and set up everything that you need.
If you get errors related to R when running breseq installed through conda, run this additional command to fix them:
conda update -c rdonnellyr -c main --all
breseq-gui is an Electron Forge project. For development, you will need to install npm and then install Electron.
You should now be able to run this command from the main source directory to launch the repository version of breseq-gui:
npm start