Pinned Repositories
artemisia
Perl tools for hacking genomic data
barrys_conda_envs
Conda environments repository for Barry Moore
C_Sandbox
A repo for playing with C code
catherpes
Python tools for hacking genomic data
cercocarpus
Python tools for hacking text data
cirque
Perl tools for hacking on text data
cruzdb
python access to UCSC genomes database
spikely
A tool for spiking pathogenic alleles into a VCF file for testing disease gene/variant prioritization tools
GAL
Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations
Specifications
GFF and GVF specification documents
barrymoore's Repositories
barrymoore/spikely
A tool for spiking pathogenic alleles into a VCF file for testing disease gene/variant prioritization tools
barrymoore/artemisia
Perl tools for hacking genomic data
barrymoore/barrys_conda_envs
Conda environments repository for Barry Moore
barrymoore/C_Sandbox
A repo for playing with C code
barrymoore/catherpes
Python tools for hacking genomic data
barrymoore/cercocarpus
Python tools for hacking text data
barrymoore/cirque
Perl tools for hacking on text data
barrymoore/cruzdb
python access to UCSC genomes database
barrymoore/FarmHand
FarmHand provides a perl interface to the MPI library allowing you to write perl scripts that can execute a function on multiple data points in parallel in an MPI environment with minimal interaction with (or understanding of) MPI specific code.
barrymoore/gffutils
GFF and GTF file manipulation and interconversion
barrymoore/GVCF_pipeline-nf
Nextflow pipeline for generate GVCF from BAM with GenomeAnalysisTK with step of realignment
barrymoore/mm-github-pages-starter
Minimal Mistakes GitHub Pages site starter
barrymoore/hap.py
Haplotype VCF comparison tools
barrymoore/hts-python
pythonic wrapper for htslib
barrymoore/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
barrymoore/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
barrymoore/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
barrymoore/Nirvana
The nimble & robust variant annotator
barrymoore/oneliners
Useful bash one-liners for bioinformatics.
barrymoore/PhenVen
barrymoore/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
barrymoore/pyfaidx
Efficient pythonic random access to fasta subsequences
barrymoore/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
barrymoore/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
barrymoore/SandBox
barrymoore/slate
Slate is a Jekyll theme for GitHub Pages