extract peptide/protein count
francescocay opened this issue · 1 comments
francescocay commented
When using plotCount(pepdat), does the function allow extraction of the calculated peptide/protein counts that are used for plotting (i.e. to be subsequently exported in a txt file)?
MarekGierlinski commented
No, it does not provide these numbers, but it is easy to find them. If pdat is a proteusData object, you can find protein counts using
cnt <- apply(pdat$tab, 2, function(x) sum(!is.na(x)))