bashirhamidi

bashirhamidi's Stars

• marschmi/Diversity_Productivity

  Microhabitats associate with bacterial biodiversity-ecosystem function relationships

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• mcdgit29/pyelixhauser

  Python package to detect clinical morbodity in ICD10 and ICD9 codes

  Language:Python2

• mcdgit29/CancerUtils

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• JDMusc/READ-TV

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• OHDSI/Atlas

  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

  Language:JavaScript265133

• krisrs1128/microbiome_plvm

  Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."

  Language:R213

• piyuranjan/DicksonLabScripts

  Scripts for everyday work in the Dickson lab

  Language:Perl41

• i2b2/i2b2-data

  The i2b2 data repository

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• feltus/OSG-GEM

  Open Science Grid Workflow That Creates Gene Expression Matrices (GEMs) from SRA/FASTQ NGS Files

  Language:Python92

• HarryStevens/geometric

  A JavaScript library for doing geometry.

  Language:JavaScript96949

• ruggleslab/jukebox

  Language:R56

• cbg-ethz/epistasis-formulas

  Computes higher-order interactions such as 2-way, 3-way,…, n-way interaction coordinates and some circuits in the n-locus case taking as input 2^n experimental measurements.

  Language:Python22

• sanjaysingh765/perl-scripts-bioinformatic-made-simple-com

  Automatically exported from code.google.com/p/perl-scripts-bioinformatic-made-simple-com

  Language:Perl1

• YinanZheng/HIMA

  High-dimensional Mediation Analysis (HIMA)

  Language:R2116

• zhaoyanswill/RAPSearch2

  Reduced Alphabet based Protein similarity Search

  Language:C++4015

• metageni/SUPER-FOCUS

  A tool for agile functional analysis of shotgun metagenomic data

  Language:Python2112

• jchen1981/MedTest

  A distance-based approach for testing the mediation effect of the microbiome

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• QuantumBadger/RedReader

  An unofficial open source Android app for Reddit.

  Language:Java2k482

• canlab/MediationToolbox

  Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

  Language:HTML7828

• mariarizzo/energy

  energy package for R

  Language:R427

• joey711/shiny-phyloseq

  An interactive web application for demonstrating and using phyloseq.

  Language:HTML5845

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R579188

• benjjneb/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R42

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R460142