/EGNN

Code for 'Understanding Multivariate Drug-Target-Disease Interdependence via Event-Graph'

Primary LanguagePythonApache License 2.0Apache-2.0

Understanding Multivariate Drug-Target-Disease Interdependence via Event-Graph

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This repository is the implementation of the paper:

Qu Jingwei, Wang Bei, Zhixun Li, Xiaoqing Lyu, and Zhi Tang. Understanding Multivariate Drug-Target-DiseaseInterdependence via Event-Graph (BIBM2021)

Requirement

- python
- torch
- rdkit
- Bio
- pyMeSHSim

Dataset

The data set used in this paper is collected from Stanford Biomedical Network Dataset Collection. You can the drug-target, drug-drug, drug-disease, disease-target, disease-disease relationships from this website.

How to use

sh run.sh

How to cite

If you use EGNN in an academic publication, cite as:

@INPROCEEDINGS{9669683,
  author={Qu, Jingwei and Wang, Bei and Li, Zhixun and Lyu, Xiaoqing and Tang, Zhi},
  booktitle={2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)}, 
  title={Understanding Multivariate Drug-Target-DiseaseInterdependence via Event-Graph}, 
  year={2021},
  volume={},
  number={},
  pages={1685-1687},
  doi={10.1109/BIBM52615.2021.9669683}}