Mathematical and Computational Biology Research Group
Team of Mathematical and Computational Biology at Univ Grenoble Alpes (France).
Grenoble
Pinned Repositories
geneticgap
Repository related to "A quantitative theory for genomic offset statistics"
LEA
lfmm
Fitting latent factor mixed models
Loter
A software package for local ancestry inference and haplotype phasing
medepir
MEthylation DEconvoluation PIpeline in R
pcadapt
Performing highly efficient genome scans for local adaptation with R package pcadapt v4
penda
PenDA is a rank-based method for personalized differential analysis.
SSMPG2017
Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)
SSMPG2022
Resources for Software and Statistical Methods for Population Genetics (SSMPG 2022)
TESS3_encho_sen
TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.
Mathematical and Computational Biology Research Group's Repositories
bcm-uga/Loter
A software package for local ancestry inference and haplotype phasing
bcm-uga/pcadapt
Performing highly efficient genome scans for local adaptation with R package pcadapt v4
bcm-uga/TESS3_encho_sen
TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.
bcm-uga/SSMPG2017
Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)
bcm-uga/lfmm
Fitting latent factor mixed models
bcm-uga/LEA
bcm-uga/penda
PenDA is a rank-based method for personalized differential analysis.
bcm-uga/SSMPG2022
Resources for Software and Statistical Methods for Population Genetics (SSMPG 2022)
bcm-uga/geneticgap
Repository related to "A quantitative theory for genomic offset statistics"
bcm-uga/medepir
MEthylation DEconvoluation PIpeline in R
bcm-uga/NaturalGWAS
R package for the special issue "MER - Natural GWAS"
bcm-uga/tfa
Factor analysis of ancient DNA samples
bcm-uga/apTreeshape
bcm-uga/gedepir
Gene Expression DEconvolution PIpeline in R
bcm-uga/IC-Finder
Segmentations of HiC maps into hierarchical interaction compartments
bcm-uga/LEA3_simulation_script
Scripts and data sets reproducing the results presented in (Gain & François, 2020)
bcm-uga/tuto-ssh
How to work on BCM servers (krakenator, luxor) from home?
bcm-uga/dmprocr
An R package that performs differential methylation profiles clustering.
bcm-uga/hadaca3
bcm-uga/pendadata
A set of data dedicated to the penda R package.
bcm-uga/abc
R package for Approximate Bayesian Computation
bcm-uga/bcm-uga.github.io
Template for creating your website with R markdown.
bcm-uga/dmprocrdata
A set of data dedicated to the dmprocr R package.
bcm-uga/hdmax2
High dimensional mediation analysis with max-squared tests
bcm-uga/HDMAX2_Simulation_Scripts
Scripts reproducing results presented in High Dimensional Mediation Analysis: a new method applied to maternal smoking, placental DNA methylation and birth outcomes (Jumentier et al. 2022)
bcm-uga/isd
Ressources pour les travaux pratiques d'introduction à la science des données
bcm-uga/Ritmic
bcm-uga/scripts_sagmb
R scripts for Jumentier et al. 2021
bcm-uga/spectralfst
A package to compute values and matrices of interest described in the paper "A Spectral Theory for Wright’s Inbreeding Coefficients and Related Quantities" François et Gain 2020
bcm-uga/xgboostforabc
R Scripts to perform ABC using xgboost