Pinned Repositories
bdklahn.github.io
Test site.
biocomplexity-k8s
BII Biocomplexity
bootstrap
Repo to track BV-BRC dependencies, for developing PRs against.
BV-BRC-Web
The BV-BRC Web Application
bvbrc_rnaseq
bvbrc_rnaseq repo to develop for pull requests
campy
ckan.jl
Julia ckan API client
CollabTainer
Example starter container to set up collaborative apps by collaborative people for related work.
edda
PatchSim
Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
bdklahn's Repositories
bdklahn/PatchSim
Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
bdklahn/bdklahn.github.io
Test site.
bdklahn/biocomplexity-k8s
BII Biocomplexity
bdklahn/bootstrap
Repo to track BV-BRC dependencies, for developing PRs against.
bdklahn/BV-BRC-Web
The BV-BRC Web Application
bdklahn/bvbrc_rnaseq
bvbrc_rnaseq repo to develop for pull requests
bdklahn/ckan.jl
Julia ckan API client
bdklahn/CollabTainer
Example starter container to set up collaborative apps by collaborative people for related work.
bdklahn/CoRC
The Copasi R connector, a high-level R API for Copasi
bdklahn/EpiApps.jl
Collection of contributed Epidemiological Applications
bdklahn/EpiR
A base container simply to have prebuilt (amd64 and arm64) binary dependencies for R epi-related libraries.
bdklahn/graphiql-cdn
Example GraphiQL web page to access Github's Graphql API.
bdklahn/nbbrief_utils
Utilities for creating small nbbrief pages and site.
bdklahn/nbconvert
Jupyter Notebook Conversion
bdklahn/p3_fqutils
bdklahn/test
just for testing pushing tags, etc.
bdklahn/zbackup
testing fork for ZBackup, a versatile deduplicating backup tool
bdklahn/dev_container
build a deployment environment
bdklahn/EpiTainer
A Docker container to support different epidemiological apps
bdklahn/Genie.jl
🧞The highly productive Julia web framework
bdklahn/GoogleCloud.jl
Google Cloud APIs for Julia
bdklahn/hostile
Accurate host read removal
bdklahn/JuCondaR
Base container with Julia Miniconda and R
bdklahn/JuMambaR
Base container including Julia, MIcromamba, and R.
bdklahn/PEpiTA
Phase-based Epidemic Time series Analyzer.
bdklahn/relationformer
Relationformer: A Unified Framework for Image-to-Graph Generation (update to run on HPC)
bdklahn/Socrata2.jl
Tools for interacting with Socrata Data APIs.
bdklahn/TestMamba.jl
Test installing Python scripts into Scratch space with MicroMamba.jl.
bdklahn/transit
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
bdklahn/Yggdrasil
Collection of builder repositories for BinaryBuilder.jl, to develop and pull-request from