beast-dev/doc

Issues

• Update about page

  #49 opened 6 months ago by rambaut
  1

• Updates needed to pages about BEAST x

  #54 opened 6 months ago by rambaut
  0

• Add information about installing from bioconda

  #52 opened 6 months ago by rambaut
  0

• search bar doesn't seem to work?

  #33 opened 7 months ago by maxbiostat
  1

• Include author information in the page frontmatter

  #50 opened 7 months ago by rambaut
  1

• Update 'walk-through' of using BEAUti to design an analysis

  #51 opened 7 months ago by rambaut
  0

• Finish rates/dates 3rd Tutorial

  #30 opened 8 months ago by rambaut
  1

• Update pages on SPREAD/SPREAD3

  #47 opened a year ago by rambaut
  2

• Create guidance page on installing Java on Mac - especially Apple Silicon

  #48 opened a year ago by rambaut
  0

• Explanation of nu/mu

  #35 opened 6 years ago by rambaut
  5

• Need section on Importing Taxon Sets

  #34 opened 7 years ago by GuyBaele
  0

• Create the 'second tutorial' on analysing the output.

  #7 opened 7 years ago by rambaut
  0

• Workshop Model Selection tutorial needs work

  #32 opened 7 years ago by rambaut
  0

• Check exact JDK/JRE requirements

  #31 opened 7 years ago by rambaut
  0

• Tutorial idea: HPMs

  #8 opened 7 years ago by rambaut
  6

• Create a reference page listing and discussing the tree priors

  #6 opened 7 years ago by rambaut
  2

• Error message page

  #3 opened 7 years ago by rambaut
  0

• Create FAQ document

  #2 opened 7 years ago by rambaut
  0

• Port tutorials

  #1 opened 7 years ago by rambaut
  1

• Create a reference page discussing the molecular clock models

  #5 opened 7 years ago by rambaut
  1

• Density plots of default priors?

  #27 opened 7 years ago by maxbiostat
  1

• Downplay HME, sHME and AICM in Model Selection tutorial

  #24 opened 7 years ago by rambaut
  2

• Full BEAST XML reference takes 15secs to compile

  #26 opened 7 years ago by rambaut
  0

• Tutorial: robust counting and d N / d S relative rate estimation

  #25 opened 7 years ago by msuchard
  0

• How-to on Ancestral State reconstruction

  #23 opened 7 years ago by rambaut
  0

• How to on creating custom substitution models

  #22 opened 7 years ago by rambaut
  0

• Tutorial: Discrete traits.

  #21 opened 7 years ago by rambaut
  1

• Tutorial: Discrete phylogeography tutorial

  #17 opened 7 years ago by rambaut
  0

• Tutorial: Continous phylogeography

  #16 opened 7 years ago by rambaut
  1

• Workshop tutorials.

  #20 opened 7 years ago by rambaut
  0

• Tutorial: Coalescent models

  #19 opened 7 years ago by rambaut
  0

• Advanced tutorial - GLM discrete trait analysis.

  #18 opened 7 years ago by rambaut
  0

• Reference page on the guess dates panel

  #14 opened 7 years ago by rambaut
  0

• Reference on command line BEAST

  #15 opened 7 years ago by rambaut
  0

• Create a reference page listing parameters and prior choices

  #13 opened 7 years ago by rambaut
  0

• Tutorial idea: Estimating Tipdates.

  #9 opened 7 years ago by rambaut
  5

• Standardize links and images in content

  #12 opened 7 years ago by rambaut
  0

• Tutorial Idea: Constant, Exponential and Logistic Coalescent

  #11 opened 7 years ago by rambaut
  0

• Tutorial idea: Bayesian Skyride and Skygrid

  #10 opened 7 years ago by rambaut
  0

• Create a nice, clean, getting started tutorial.

  #4 opened 7 years ago by rambaut
  0