new 10x mtx version
Opened this issue · 1 comments
wangjiawen2013 commented
Hi,
bc.export.X_to_mtx() output the previous mtx generated by cellranger 2:
barcodes.tsv genes.tsv matrix.mtx
The latest cellranger generated distinct outputs now:
barcodes.tsv.gz features.tsv.gz matrix.mtx.gz
"genes.tsv" in cellranger2 has become "features.tsv.gz" in cellranger3. There are two columns in genes.tsv but three columns in features.tsv.gz. Could you update bc.export.X_to_mtx() to support the latest mtx ?
kohleman commented
Hi @wangjiawen2013,
thanks for your request. We will look into this as soon as we have the capacity to do so.
Thanks,
Manuel