Issues
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- 0
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Issue with tl.annotate_cells_cluster function
#344 opened by prasadm1k - 1
new 10x mtx version
#342 opened by wangjiawen2013 - 0
high memory consumption and nonetype error
#341 opened by wangjiawen2013 - 27
LFS quota exceeded
#323 opened by idavydov - 0
- 0
Move to poetry as a dependency manager
#317 opened by kohleman - 0
- 0
re-uploaded Crispr data set to zenodo
#309 opened by kohleman - 0
Wrongly use `cnames` instead of `cnamesDBlabel` for annotation after reclustering
#301 opened by matchy233 - 2
`IndexError: list index out of range` while running the cell annotation workbook
#299 opened by matchy233 - 2
env yaml file
#298 opened by schmucr1 - 1
Error in neutrophil signature
#289 opened by llumdi - 0
Riverplot: Figure height and width not usable
#280 opened by kohleman - 0
- 2
Remove duplicated log messages
#265 opened by kohleman - 3
- 2
- 0
Allow a '-' in gene names
#262 opened by kohleman - 0
homologs folder is not installed
#260 opened by kohleman - 1
Some chunks get lost byopening notebooks in JupyterLab (instead of classical Jupyter notebook)
#251 opened by hatjek - 0
- 0
make plots working with matplotlib >= 3.6
#253 opened by kohleman - 0
Compile the documentation for release 2.5
#218 opened by hatjek - 6
- 3
Omit or replace R functions
#217 opened by hatjek - 0
Download of zenodo fails when running tests
#240 opened by kohleman - 5
README update: python version
#204 opened by leipnerm - 1
Request new module on our sHPC with Python 3.9
#228 opened by kohleman - 2
- 5
- 2
- 0
Omit the regressOut step
#215 opened by hatjek - 1
- 2
bc.pl.max_counts(adata, max_counts=max_counts, ax = ax4)" fails with "TypeError: float()
#174 opened by hatjek - 1
figure size for celllabel_quant_stackedbar
#181 opened by marlisese - 1
problem with regressOut
#201 opened by schmucr1 - 2
- 0
Typo in "def additional_labeling" ?
#187 opened by schmucr1 - 3
- 1
Upgrade besca to follow up Scanpy
#186 opened by ajulienla - 0
obtain_dblabel does not handled unassigned clusters
#189 opened by ajulienla - 3
Warning when running bc.st.per_cell_normalize. Non execution of C script
#178 opened by alberto-valdeolivas - 1
type error in add_anno
#169 opened by schmucr1 - 0
Upgrading plot functions with axes
#188 opened by ajulienla - 1
regress_out stalled when used on some clusters
#182 opened by ajulienla - 0
Additional parameters `min_fract_pos` and `min_cells_per_group` in perform_dge()
#180 opened by llumdi - 0
Getting started guide and interactive notebooks
#177 opened by hatjek - 0