/kinex

Kinex infers causal kinases from phosphoproteomics data

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

Kinex

Alexandra Valeanu and Jitao David Zhang with the input and help of many colleagues

kinex is a workflow implemented in a Python package with the same name. Kinex infers causal kinases from phosphoproteomics data.

Table of Contents

Main Features

  • Substrate Sequence Scoring
  • Causal Kinases Inference
  • Comparison with Drug Collection

Requirements

Installation

Here are few ways to install kinex

From Conda

  1. Create and activate your conda environment
conda create --name kinex
conda activate kinex
  1. Install kinex package
conda install -c bioconda kinex

From source

  1. Create and activate a python 3.11 conda environment
conda create --name kinex
conda activate kinex
conda install python=3.11
  1. Download the package:
git clone git@github.com:bedapub/kinex.git
cd kinex
  1. Install the package
pip install .

Documentation

You can find detailed documentation describing every feature of the package with examples and tutorials here.