Pinned Repositories
Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript
ansible-cvmfs
An Ansible role for installing and configuring CernVM-FS (CVMFS)
ansible-cvmfs-roles
ansible-qchem-flexnet
compatibility-layer
Compatibility layer of the EESSI project
cvmfs
The CernVM File System
cvmfs-tutorial-2021
CernVM-FS tutorial at 6th EasyBuild User Meeting (Jan'21)
cvmfs-tutorial-hpc-best-practices
Contents for "Best Practices for CernVM-FS in HPC" tutorial
dockertest
docs
Documentation for the European Environment for Scientific Software Installations (EESSI)
bedroge's Repositories
bedroge/ansible-qchem-flexnet
bedroge/Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript
bedroge/ansible-cvmfs
An Ansible role for installing and configuring CernVM-FS (CVMFS)
bedroge/ansible-cvmfs-roles
bedroge/compatibility-layer
Compatibility layer of the EESSI project
bedroge/cvmfs
The CernVM File System
bedroge/cvmfs-tutorial-2021
CernVM-FS tutorial at 6th EasyBuild User Meeting (Jan'21)
bedroge/cvmfs-tutorial-hpc-best-practices
Contents for "Best Practices for CernVM-FS in HPC" tutorial
bedroge/dockertest
bedroge/docs
Documentation for the European Environment for Scientific Software Installations (EESSI)
bedroge/easybuild
EasyBuild - building software with ease
bedroge/easybuild-docs
EasyBuild documentation (mkdocs)
bedroge/easybuild-easyblocks
Collection of easyblocks that implement support for building and installing software with EasyBuild.
bedroge/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
bedroge/easybuild-framework
EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.
bedroge/eb-rocm
bedroge/eessi-bot-software-layer
Bot to help with requests to add software installations to the EESSI software layer
bedroge/eessi-demo
EESSI demo
bedroge/filesystem-layer
Filesystem layer of the EESSI project
bedroge/gentoo
[MIRROR] Official Gentoo ebuild repository
bedroge/gentoo-overlay
Gentoo overlay for the EESSI compatibility layer
bedroge/github-action-fpm
Github action to build packages using fpm
bedroge/habrok-cvmfs
bedroge/influxdb-slurm-monitoring
bedroge/infrastructure
Scripts & stuff to set up EESSI infrastructure
bedroge/isc-tutorial
bedroge/league-of-robots
Code and configs for deploying (virtual) HPC clusters.
bedroge/numpy
The fundamental package for scientific computing with Python.
bedroge/software-layer
Software layer of the EESSI project
bedroge/test-suite
A portable test suite for software installations, using ReFrame