beigelk

beigelk's Stars

• cran/pracma

  :exclamation: This is a read-only mirror of the CRAN R package repository. pracma — Practical Numerical Math Functions

  Language:R2814

• komalsrathi/rshiny_tutorial

  Basic R shiny tutorial for beginners

  Language:R2

• SGDDNB/ShinyCell

  Shiny Interactive Web Apps for Single-Cell Data

  Language:R14957

• ludvigla/murine_colon_explorer

  Language:R63

• hms-dbmi/viv

  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  Language:JavaScript27442

• holab-hku/DCATS

  Language:R8

• igrabski/sc-SHC

  Significance analysis for clustering single-cell RNA-sequencing data

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• sacanlab/immunotar

  Language:R82

• SingleR-inc/celldex

  Collection of cell type reference datasets.

  Language:R427

• saezlab/OmnipathR

  R client for the OmniPath web service

  Language:R10120

• jmtomczak/vae_vampprior

  Code for the paper "VAE with a VampPrior", J.M. Tomczak & M. Welling

  Language:Python22150

• phipsonlab/speckle

  R package for analysing single cell data

  Language:R476

• niaid/dsb

  Normalize CITEseq Data

  Language:R6313

• samuel-marsh/scCustomize

  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

  Language:R20121

• zhezhangsh/awsomics

  AWSOMICS applications

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• chris-mcginnis-ucsf/DoubletFinder

  R package for detecting doublets in single-cell RNA sequencing data

  Language:R400106

• fairdataihub/SODA-for-SPARC

  Simplifying data curation for researchers funded by the NIH SPARC initiative

  Language:JavaScript289

• ncborcherding/scRepertoire

  A toolkit for single-cell immune profiling

  Language:R30149

• crazyhottommy/TCR-BCR-seq-analysis

  T/B cell receptor sequencing analysis notes

  20230

• SciCrunch/sparc-curation

  code and files for SPARC curation workflows

  Language:Python1412

• AllenCellModeling/aicsimageio

  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

  Language:Python20151

• zeiss-microscopy/OAD

  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

  Language:Jupyter Notebook12549

• ksiller/nb-finder

  Language:Shell11

• clauswilke/dataviz

  A book covering the fundamentals of data visualization

  Language:HTML3.2k697

• darencard/dataviz

  A book covering the fundamentals of data visualization

  Language:R2

• powellgenomicslab/Nebulosa

  R package to visualize gene expression data based on weighted kernel density estimation

  Language:R767

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R39981

• BioDepot/BioDepot-workflow-builder

  :computer: GUI for creating bioinformatics workflows from :whale: Docker containers:

  Language:Python6419

• CostaLab/reg-gen

  Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

  Language:Python10330

• ShellyCoder/cellcall

  inferring cell-cell communication from scRNA-seq of ligand-receptor

  Language:R7320