beliveau-lab/OligoMiner

Error in installation of packages

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Hi,

I am not a very computer savvy user here. I am on a windows 10 machine. When I put the command conda env create -f environment.yml into the miniconda command line it gives me the following output:
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:

  • bowtie2=2.3.5.1
  • scikit-learn=0.20.4
  • jellyfish=2.2.10
  • nupack=3.0.6

As far as I can tell conda cannot find these programs to download. Looking forward to using this tool, any help is appreciated!

It looks there are no conda builds for those package versions on Windows OS. I recommend enabling the windows subsystem for linux (WSL) and installing Ubuntu. You can then create the conda env in a ubuntu terminal (after installing miniconda within ubuntu) and the Linux conda builds will be used. There is more info about this here:

https://ubuntu.com/tutorials/install-ubuntu-on-wsl2-on-windows-10#1-overview