LOCUS NW_023312688 196462 bp DNA linear CON 07-JUL-2020
DEFINITION Stegodyphus dumicola isolate AA2019 ecotype Namibia, Etosha
unplaced genomic scaffold, ASM1061486v1 SEQ_00001, whole genome
shotgun sequence.
ACCESSION NW_023312688
VERSION NW_023312688.1
DBLINK BioProject: PRJNA642917
BioSample: SAMN13619660
Assembly: GCF_010614865.1
KEYWORDS WGS; RefSeq.
SOURCE Stegodyphus dumicola
ORGANISM Stegodyphus dumicola
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida;
Araneae; Araneomorphae; Entelegynae; Eresoidea; Eresidae;
Stegodyphus.
REFERENCE 1 (bases 1 to 196462)
AUTHORS Liu,S., Aageaard,A., Bechsgaard,J. and Bilde,T.
TITLE DNA Methylation Patterns in the Social Spider, Stegodyphus dumicola
JOURNAL Genes (Basel) 10 (2), E137 (2019)
PUBMED 30759892
REMARK Publication Status: Online-Only
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
JAADJH010000001.1.
Assembly name: ASM1061486v1
The genomic sequence for this RefSeq record is from the
whole-genome assembly released by the None on 2020/02/14. The
original whole-genome shotgun project has the accession
JAADJH000000000.1.
##Genome-Assembly-Data-START##
Assembly Provider :: None
Assembly Method :: DBG2OLC v. Nov 16th, 2017
Genome Representation :: Full
Expected Final Version :: Yes
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..196462
/organism="Stegodyphus dumicola"
/mol_type="genomic DNA"
/isolate="AA2019"
/isolation_source="tree"
/db_xref="taxon:202533"
/chromosome="Unknown"
/tissue_type="whole individual"
/ecotype="Namibia, Etosha"
/country="Namibia"
/lat_lon="19.06232 S 17.86362 E"
/collection_date="Jan-2017"
gene 27109..87988
/gene="LOC118188962"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon."
/db_xref="GeneID:118188962"
mRNA join(27109..27370,36197..36309,36398..36491,48378..48632,
64458..64527,64681..64766,74809..74957,77345..77481,
87849..87988)
/gene="LOC118188962"
/product="immunoglobulin-binding protein 1-like"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 51 samples with support for all annotated
introns"
/transcript_id="XM_035362696.1"
/db_xref="GeneID:118188962"
CDS join(27203..27370,36197..36309,36398..36491,48378..48632,
64458..64527,64681..64766,74809..74957,77345..77481,
87849..87889)
/gene="LOC118188962"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon."
/codon_start=1
/product="immunoglobulin-binding protein 1-like"
/protein_id="XP_035218587.1"
/db_xref="GeneID:118188962"
/translation="MTSSELSLVLQSLTPLEEKTVDDKSGSILSKTFDSCCQAYDLIQ
DSDLDSSNTEIQGAISQCIKHLELCTHMVNELNLFSSNEAIGEVQTSSLKYLLLPALL
GSLNLQVQHKDMSKRLENLHIAEVYFKDFLLRCRNYELCTVELPEDFEEDGLENGDSS
VKNSSHAHNVLDAAIVRERKIQQYKRTKELEKREKELKPALVRPDAEEFIREYYMILL
EKWIMTVTAELETVKTEKNIVGTMVQMKDKSGNNLNRKESVKAKPLKTIIITKNEIQK
KVFGMGYPSLPVMTIDDFYRQRFEKAIQEQKSAVKGMSLQEKALYGDDNTKEEEEIKK
EELMEKDDPVELAKARQWNDWKDENPRGSGNRKNKG"##gff-version 3
##sequence-region NW_023312688.1 1 196462
NW_023312688.1 annotation remark 1 196462 . . . accessions=NW_023312688;comment=REFSEQ INFORMATION: The reference sequence is identical to%0AJAADJH010000001.1.%0AAssembly name: ASM1061486v1%0AThe genomic sequence for this RefSeq record is from the%0Awhole-genome assembly released by the None on 2020/02/14. The%0Aoriginal whole-genome shotgun project has the accession%0AJAADJH000000000.1.;contig=join%28JAADJH010000001.1:1..196462%29;data_file_division=CON;date=07-JUL-2020;keywords=WGS,RefSeq;molecule_type=DNA;organism=Stegodyphus dumicola;references=location: %5B0:196462%5D%0Aauthors: Liu%2CS.%2C Aageaard%2CA.%2C Bechsgaard%2CJ. and Bilde%2CT.%0Atitle: DNA Methylation Patterns in the Social Spider%2C Stegodyphus dumicola%0Ajournal: Genes %28Basel%29 10 %282%29%2C E137 %282019%29%0Amedline id: %0Apubmed id: 30759892%0Acomment: Publication Status: Online-Only;sequence_version=1;source=Stegodyphus dumicola;structured_comment=OrderedDict%28%5B%28%27Genome-Assembly-Data%27%2C OrderedDict%28%5B%28%27Assembly Provider%27%2C %27None%27%29%2C %28%27Assembly Method%27%2C %27DBG2OLC v. Nov 16th%2C 2017%27%29%2C %28%27Genome Representation%27%2C %27Full%27%29%2C %28%27Expected Final Version%27%2C %27Yes%27%29%2C %28%27Genome Coverage%27%2C %2779.0x%27%29%2C %28%27Sequencing Technology%27%2C %27Illumina HiSeq%3B PacBio%27%29%5D%29%29%2C %28%27Genome-Annotation-Data%27%2C OrderedDict%28%5B%28%27Annotation Provider%27%2C %27NCBI%27%29%2C %28%27Annotation Status%27%2C %27Full annotation%27%29%2C %28%27Annotation Name%27%2C %27Stegodyphus dumicola Annotation Release 100%27%29%2C %28%27Annotation Version%27%2C %27100%27%29%2C %28%27Annotation Pipeline%27%2C %27NCBI eukaryotic genome annotation pipeline%27%29%2C %28%27Annotation Software Version%27%2C %278.4%27%29%2C %28%27Annotation Method%27%2C %27Best-placed RefSeq%3B Gnomon%27%29%2C %28%27Features Annotated%27%2C %27Gene%3B mRNA%3B CDS%3B ncRNA%27%29%5D%29%29%5D%29;taxonomy=Eukaryota,Metazoa,Ecdysozoa,Arthropoda,Chelicerata,Arachnida,Araneae,Araneomorphae,Entelegynae,Eresoidea,Eresidae,Stegodyphus;topology=linear