benbfly
Principal Bioinformatician, VolitionRx Associate Professor, Hebrew University of Jerusalem
@VolitionRx Jerusalem, Israel
Pinned Repositories
benbfly.github.io
cedarsbioGitHW
A homework folder for Cedars compbio students
cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
Fragmentomics_GenomBiol
Pipeline to replicate Katsman et. al fragmentomics results
LIONS
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
ProgrammingCourse
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
nextflow
A DSL for data-driven computational pipelines
bamtools
C++ API & command-line toolkit for working with BAM data
benbfly's Repositories
benbfly/benbfly.github.io
benbfly/cedarsbioGitHW
A homework folder for Cedars compbio students
benbfly/cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
benbfly/Fragmentomics_GenomBiol
Pipeline to replicate Katsman et. al fragmentomics results
benbfly/LIONS
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
benbfly/megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
benbfly/ProgrammingCourse