benc347

BTC_microbiome_analysis

A series of R Markdown files for analyzing 16S rRNA gene amplicon sequencing microbiome data

BTC_WGS_Pipeline

A series of scripts for start-to-finish whole genome sequence analysis

coprarna_modifications

Modified source code of CopraRNA2 (Patrick R Wright et al.) allowing analysis of non-RefSeq genomes and IntaRNA parameter control

elk_microbiome

Contains code used in generating data, analyzing data, and creating graphics for a 16S rRNA gene amplicon study of the elk vaginal and fecal microbiomes

rli47_analysis

BCB546X_MadMaize_final

Reproducible science: re-creating the analyses in Blanca, José, et al. "Genomic variation in tomato, from wild ancestors to contemporary breeding accessions." BMC genomics 16.1 (2015): 257. Final project for BCB546X, MadMaize project group

R_assignment

benc347/BTC_microbiome_analysis

A series of R Markdown files for analyzing 16S rRNA gene amplicon sequencing microbiome data

benc347/BTC_WGS_Pipeline

A series of scripts for start-to-finish whole genome sequence analysis

benc347/coprarna_modifications

Modified source code of CopraRNA2 (Patrick R Wright et al.) allowing analysis of non-RefSeq genomes and IntaRNA parameter control

benc347/elk_microbiome

Contains code used in generating data, analyzing data, and creating graphics for a 16S rRNA gene amplicon study of the elk vaginal and fecal microbiomes

benc347/rli47_analysis