Pinned Repositories
BTC_microbiome_analysis
A series of R Markdown files for analyzing 16S rRNA gene amplicon sequencing microbiome data
BTC_WGS_Pipeline
A series of scripts for start-to-finish whole genome sequence analysis
coprarna_modifications
Modified source code of CopraRNA2 (Patrick R Wright et al.) allowing analysis of non-RefSeq genomes and IntaRNA parameter control
elk_microbiome
Contains code used in generating data, analyzing data, and creating graphics for a 16S rRNA gene amplicon study of the elk vaginal and fecal microbiomes
rli47_analysis
BCB546X_MadMaize_final
Reproducible science: re-creating the analyses in Blanca, José, et al. "Genomic variation in tomato, from wild ancestors to contemporary breeding accessions." BMC genomics 16.1 (2015): 257. Final project for BCB546X, MadMaize project group
R_assignment
benc347's Repositories
benc347/BTC_microbiome_analysis
A series of R Markdown files for analyzing 16S rRNA gene amplicon sequencing microbiome data
benc347/BTC_WGS_Pipeline
A series of scripts for start-to-finish whole genome sequence analysis
benc347/coprarna_modifications
Modified source code of CopraRNA2 (Patrick R Wright et al.) allowing analysis of non-RefSeq genomes and IntaRNA parameter control
benc347/elk_microbiome
Contains code used in generating data, analyzing data, and creating graphics for a 16S rRNA gene amplicon study of the elk vaginal and fecal microbiomes
benc347/rli47_analysis