/pecan

Probabilistic consistency based aligner

Primary LanguageJavaMIT LicenseMIT

Installing pecan.

(1) Install Exonerate by Guy Slater

(2) Build the code: Do 'javac bp/pecan/Pecan.java' and 'javac bp/trawler/Trawler.java'

(3) (optional) Add the directory pecan to your class path. For example: CLASSPATH=foo/pecan/

(4) Test the installation by running pecan, for example: java -cp {path to pecan dir} bp.pecan.Pecan (if you didn't set the class path) or: java bp.pecan.Pecan

See https://github.com/benedictpaten/ for different projects.

For usage instructions see doc/