benjaminhgood
Assistant Professor of Applied Physics at Stanford University. Evolutionary dynamics in microbial communities.
Stanford University
Pinned Repositories
coarse_coal
Companion software for Good et al, PLoS Genetics (2013)
consumer_resource_simulations
Simulations of eco-evolutionary dynamics in consumer resource models
fmt_timecourse
Scripts for analyzing the FMT timecourse data from Li et al (Science, 2016)
highres_microbiome_timecourse
Scripts for analyzing genetic variation in a high-resolution timecourse from the human gut microbiome
LTEE-metagenomic
Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
ltee_inference
Population genetic simulations and likelihood estimation algorithms for long-term evolution experiments.
microbiome_ecoevo_correlations
Associated computer code for the paper "Eco-evolutionary feedbacks in the human gut microbiome"
microbiome_evolution
Scripts for analyzing evolutionary dynamics in large cohorts of human gut metagenomes
mutator_simulations
Simulations for Good and Desai (2016)
popgen_notes
benjaminhgood's Repositories
benjaminhgood/LTEE-metagenomic
Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
benjaminhgood/microbiome_evolution
Scripts for analyzing evolutionary dynamics in large cohorts of human gut metagenomes
benjaminhgood/consumer_resource_simulations
Simulations of eco-evolutionary dynamics in consumer resource models
benjaminhgood/coarse_coal
Companion software for Good et al, PLoS Genetics (2013)
benjaminhgood/popgen_notes
benjaminhgood/highres_microbiome_timecourse
Scripts for analyzing genetic variation in a high-resolution timecourse from the human gut microbiome
benjaminhgood/fmt_timecourse
Scripts for analyzing the FMT timecourse data from Li et al (Science, 2016)
benjaminhgood/ltee_inference
Population genetic simulations and likelihood estimation algorithms for long-term evolution experiments.
benjaminhgood/microbiome_ecoevo_correlations
Associated computer code for the paper "Eco-evolutionary feedbacks in the human gut microbiome"
benjaminhgood/mutator_simulations
Simulations for Good and Desai (2016)