benjaminirving
Researcher in healthcare and machine learning. Work github profile: benjamini-huma
Oxford
Pinned Repositories
array-python-cpp
A very basic example of how to pass arrays between python and c++ using cython
coreml-simple-demo
Simple demo on how to convert and run a Keras deep learning model on macOS with CoreML
maskSLIC
Simple linear iterative clustering (SLIC) in a region of interest (ROI)
Mesh-Silhouette-Projection
3D airway mesh modelling and projection onto 2D
mlseminars-autoencoders
Jupyter notebook of my autoencoder presentation
perfusion-slic
Simple Linear Iterative Clustering adapted for 4D DCE-MRI or other perfusion imaging
python-debian-packaging-example
Simple example of packaging a python app for debian using dh-virtualenv
quantiphyse
Application for analysis and modelling of volumetric medical imaging data
lung-ct-covid-pathology-detection
Early exploration of detecting signs of lung pathology in COVID-19 Lung CT cases
benjaminirving's Repositories
benjaminirving/maskSLIC
Simple linear iterative clustering (SLIC) in a region of interest (ROI)
benjaminirving/array-python-cpp
A very basic example of how to pass arrays between python and c++ using cython
benjaminirving/python-debian-packaging-example
Simple example of packaging a python app for debian using dh-virtualenv
benjaminirving/coreml-simple-demo
Simple demo on how to convert and run a Keras deep learning model on macOS with CoreML
benjaminirving/mlseminars-autoencoders
Jupyter notebook of my autoencoder presentation
benjaminirving/Mesh-Silhouette-Projection
3D airway mesh modelling and projection onto 2D
benjaminirving/perfusion-slic
Simple Linear Iterative Clustering adapted for 4D DCE-MRI or other perfusion imaging
benjaminirving/Unet-nifti-gradio
Exploring an interface for nifti segmentation using gradio
benjaminirving/matlab-to-html-plot-animated
Convert a matlab mesh to an interactive and animated 3D figure viewable in modern browsers
benjaminirving/SSIMA-2018-tutorial-deep-learning-med-segmentation
Tutorial on deep learning for medical image segmentation for SSIMA 2018
benjaminirving/matlab-to-html-plot
A simple matlab interface to plot meshes as interactive html plots
benjaminirving/dotfiles
Dotfiles that I use mainly borrowed from others (tmux, vim, alacritty...)
benjaminirving/jupyterlab-remote-docker
Working with jupyterlab on a remote docker gpu environment - home project
benjaminirving/pieces-of-parts-demo
Demo of using pieces-of-parts based on spatial relationships to improve supervoxel classification probabilities
benjaminirving/PkView_help_files
Brief documentation for PkView (http://pkview.readthedocs.org/en/latest/)
benjaminirving/quantiphyse
Application for analysis and modelling of volumetric medical imaging data
benjaminirving/quantiphyse-docs
Documentation for Quantiphyse
benjaminirving/segmentation-morphology
A simple method to segment tubular like objects using morphological reconstruction
benjaminirving/SimpleLinearROC
A wrapper for matlab functions that provides a simple linear classifier and object oriented ROC plot