Pinned Repositories
forkedTF
ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.
forkedTF-beta
forkedTF: Representing Transcription Factor Dimer Binding Sites Using Forked-Position Weight Matrices and Forked-Sequence Logos
gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
NanoINSight
Repeat annotation tool
NanoVar
Structural variant caller for low-depth long-read sequencing data
NanoVar---archived
Archived version 1.0.2
SlicerColoc-Z-Stats
This is an extension for computing the percentage of colocalization (Spatial overlap between different channels) of Z-stack images.
sns
Analysis pipelines for sequencing data
TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions
TFregulomeR-old
TFregulomeR reveals transcription factors’ context-specific features and functions
benoukraflab's Repositories
benoukraflab/NanoVar
Structural variant caller for low-depth long-read sequencing data
benoukraflab/NanoVar---archived
Archived version 1.0.2
benoukraflab/TFregulomeR-old
TFregulomeR reveals transcription factors’ context-specific features and functions
benoukraflab/TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions
benoukraflab/forkedTF
ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.
benoukraflab/forkedTF-beta
forkedTF: Representing Transcription Factor Dimer Binding Sites Using Forked-Position Weight Matrices and Forked-Sequence Logos
benoukraflab/sns
Analysis pipelines for sequencing data
benoukraflab/gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
benoukraflab/NanoINSight
Repeat annotation tool
benoukraflab/SlicerColoc-Z-Stats
This is an extension for computing the percentage of colocalization (Spatial overlap between different channels) of Z-stack images.
benoukraflab/usf1_revision
Code pertaining to the usf1 paper revision
benoukraflab/warp
WDL Analysis Research Pipelines