Pinned Repositories
.vim
Personal VIM config
asvz-registration
gnn_agglomeration
Supervoxel Agglomeration using Graph Neural Networks with PyTorch geometric
gnn_toy_example
Getting familiar with Graph Neural Nets and the pytorch_geometric library
napari-ctc-io
motile
Multi-Object Tracker using Integer Linear Equations
traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
incasem
Automated Segmentation of cellular substructures in Electron Microscopy
tarrow
Time arrow prediction for live-cell microscopy
trackastra
bentaculum's Repositories
bentaculum/gnn_agglomeration
Supervoxel Agglomeration using Graph Neural Networks with PyTorch geometric
bentaculum/gnn_toy_example
Getting familiar with Graph Neural Nets and the pytorch_geometric library
bentaculum/napari-ctc-io
bentaculum/.vim
Personal VIM config
bentaculum/augmend
simple package for augmentation of n-dimensional arrays
bentaculum/backbones
Common neural network architectures implemented in PyTorch
bentaculum/bioimageutils
Reoccuring utility functions and scripts for ML on bioimages
bentaculum/motile
Multi-Object Tracker using Integer Linear Equations
bentaculum/project_summaries
Reports for selected projects I have worked on in the past
bentaculum/starthack19
IoT based app for automatic ride sharing, built at Start Hack 2019
bentaculum/bash-it
A community Bash framework.
bentaculum/benjamingallusser
My personal website
bentaculum/bentaculum
bentaculum/biogtr
bentaculum/daisy
Block-wise task scheduling for large nD volumes.
bentaculum/funlib.learn.torch
bentaculum/funlib.segment
Tools to segment graphs and volumes
bentaculum/funlib.show.neuroglancer
Scripts and helpers for the neuroglancer WebGL viewer.
bentaculum/gputools
GPU accelerated image/volume processing in Python
bentaculum/gunpowder
A library to facilitate machine learning on multi-dimensional images.
bentaculum/ilpy
Unified python wrappers for popular ILP solvers
bentaculum/imjoy-starter
bentaculum/kunst_automatisch_aufraeumen
bentaculum/laptrack
Particle tracking by solving linear assignment problem.
bentaculum/linajea
bentaculum/napari-segment-anything-2
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
bentaculum/nerdcommenter
Vim plugin for intensely nerdy commenting powers
bentaculum/stardist
StarDist - Object Detection with Star-convex Shapes
bentaculum/traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
bentaculum/ultrack
Cell tracking and segmentation software