The wiki is here.
git clone https://github.com/beojan/oxford-hh4b-pheno-code.git
Or if you have ssh keys associated with your GitHub account you can use the following command:
git clone git@github.com:beojan/oxford-hh4b-pheno-code.git
cd oxford-hh4b-pheno-code
source ./setupEnv.sh
Read the README.md
file in analysis