bergeycm

Anopheles_gambiae_structure_LVB

Scripts to analyze population structure of Anopheles gambiae mosquitoes in Lake Victoria basin.

DIY_bioinformatics_links

Links and resources for getting started with bioinformatics

NGS-map

A general pipeline for mapping next-gen sequencing reads and calling variants

RAD-faex

Code used in the development of the "fecalseq" method for enriching host DNA from feces

rhg-convergence-analysis

Code used for "Polygenic adaptation and convergent evolution across both growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers"

RNAseq_workshop_2017

Code for RNAseq workshop run in July 2017

stuff-i-forget

Stuff I Routinely Forget How to Do

vcf-tab-to-fasta

xspecies-exome

Analysis pipeline for cross species exome next-generation sequencing data

bergeycm/stuff-i-forget

Stuff I Routinely Forget How to Do

bergeycm/xspecies-exome

Analysis pipeline for cross species exome next-generation sequencing data

bergeycm/Anopheles_gambiae_structure_LVB

Scripts to analyze population structure of Anopheles gambiae mosquitoes in Lake Victoria basin.

bergeycm/NGS-map

A general pipeline for mapping next-gen sequencing reads and calling variants

bergeycm/DIY_bioinformatics_links

Links and resources for getting started with bioinformatics

bergeycm/rhg-convergence-analysis

Code used for "Polygenic adaptation and convergent evolution across both growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers"

bergeycm/RNAseq_workshop_2017

Code for RNAseq workshop run in July 2017

bergeycm/RAD-faex

Code used in the development of the "fecalseq" method for enriching host DNA from feces

bergeycm/vcf-tab-to-fasta

bergeycm/ABCtoolbox_power_analysis

bergeycm/awash-dopamine

Code used for analyses in Bergey et al 2016, "Dopamine pathway is highly diverged in primate species that differ markedly in social behavior"

bergeycm/BaitSTR

Automate the discovery of exact short tandem repeats (and its flanking region) from Illumina fastq sequences.

bergeycm/bedtools

A powerful toolset for genome arithmetic.

bergeycm/bergey-bioinfo

Home for random bioinformatic scripts.

bergeycm/codons-from-refgene

Given the refGene.txt database file (in ANNOVAR format), this R script outputs a BED file of the 1st, 2nd, or 3rd codons.

bergeycm/field-workers

bergeycm/fieldwork-packing-list

A list of things to bring when undertaking biological fieldwork

bergeycm/Kraken_db_install_scripts

Updated Kraken DB install scripts to cope with new-ish NCBI structure

bergeycm/tapeworm-genome-transcriptome-analyses

Code used in the analysis of tapeworm genomes.