bernatgel
Bioinformatician at IGTP. Interested in cancer genomics, data analysis and visualization. Working on NF1, Hereditary Cancer and genetic diagnostics.
Germans Trias Research Institute (IGTP)Barcelona, Spain
Pinned Repositories
ascat
ASCAT copy number R package
Bioinformatics_Workshop_March2019
CNVfilteR
R package to remove false positives of CNV calling tools by using SNV calls
CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
genomedrawer
A small javascript library to create genome/protein annotation images similar to those on Ensembl and UCSC.
genoploteR
Data plotting on gene structures
jsdas
Javascript client library for the Distributed Annotation System
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
karyoploter_tutorial
Examples on how to use the karyoploteR R/Bioconductor package
regioneR
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
bernatgel's Repositories
bernatgel/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
bernatgel/regioneR
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
bernatgel/karyoploter_tutorial
Examples on how to use the karyoploteR R/Bioconductor package
bernatgel/CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
bernatgel/genoploteR
Data plotting on gene structures
bernatgel/genomedrawer
A small javascript library to create genome/protein annotation images similar to those on Ensembl and UCSC.
bernatgel/ascat
ASCAT copy number R package
bernatgel/Bioinformatics_Workshop_March2019
bernatgel/CNVfilteR
R package to remove false positives of CNV calling tools by using SNV calls
bernatgel/jsdas
Javascript client library for the Distributed Annotation System
bernatgel/compatfreq
R package to check the relation between samples, if one derives from the other, if they come from the same individual...
bernatgel/FindFocals
A small R package to find focal genomic gains and losses in SNP array data
bernatgel/karyoploteR_questions
Data, code and images used to answer questions about karyoploteR by email, on biostars, on github...
bernatgel/PREDAsam
Modified version of R/Bioconductor PREDA package with SAM statistics re-enabled
bernatgel/regioneReload
bernatgel/StructuralVariantAnnotation
R package designed to simplify structural variant analysis