bernibra
A physicist at heart, a biologist in the books, and a data-scientist on LinkedIn.
Biomedical Data Science CenterLausanne, Switzerland
Pinned Repositories
AdvEcoProc-jupyter
This is a jupyter notebook for the practical session of the module "Structured Population Models" for the course "Advanced Ecological Processes"
bernibra.github.io
A website using the D3.js library and Mike Bostock's Zoomable Circle Packing.
CITE-formatting
This is a app designed to complement the CITE-wrangling pipeline, simplifying the process of adding new datasets to it.
CITE-wrangling
A data-processing pipeline for the standardisation of CITE-seq datasets
data-rich-insight-poor
How to use data-science to empower management and conservation
nonlinear-stan
Bayesian hierarchical non-linear models to study the shape of plant distributions
RESOLDRE
R package for the randomisation of interaction matrices
tagtango
A web app to compare single-cell annotations
muritz
directed graph alignment
pymfinder
A Python package with which to find network motifs in complex networks and to analyze a growing list of network-motif related stuff.
bernibra's Repositories
bernibra/CITE-wrangling
A data-processing pipeline for the standardisation of CITE-seq datasets
bernibra/nonlinear-stan
Bayesian hierarchical non-linear models to study the shape of plant distributions
bernibra/RESOLDRE
R package for the randomisation of interaction matrices
bernibra/CITE-formatting
This is a app designed to complement the CITE-wrangling pipeline, simplifying the process of adding new datasets to it.
bernibra/tagtango
A web app to compare single-cell annotations
bernibra/AdvEcoProc-jupyter
This is a jupyter notebook for the practical session of the module "Structured Population Models" for the course "Advanced Ecological Processes"
bernibra/bernibra.github.io
A website using the D3.js library and Mike Bostock's Zoomable Circle Packing.
bernibra/data-rich-insight-poor
How to use data-science to empower management and conservation
bernibra/dalig
bernibra/ecology-species-composition
Models used to study community assembly
bernibra/euler-tutorial
Euler workshop: learning how to use the ETHZ computer cluster.
bernibra/extract-climate
This is just an example on how to extract climatic variables for a set of sites
bernibra/find-your-holidays
This is by no means a way to avoid having actual holidays
bernibra/jupyter-lab-meeting
This is a short tutorial on how to use and create jupyter notebooks
bernibra/make-adventure
A dummy project for a Makefile demonstration
bernibra/MIREN-shiny
This is a draft for an app designed for the data collection process of the MIREN group
bernibra/MMSBM_visitation_network
Code re-adapted from the social recommendation mixed-membership stochastic block model algorithm (article https://www.pnas.org/content/113/50/14207) to analyse visitation networks
bernibra/muritz
directed graph alignment
bernibra/pollinator-multinomial
Multinomial logistic regression for the analysis of plant-pollinator interaction dynamics
bernibra/pymfinder
bernibra/Quantitative-Approaches-practical
A notebook to reproduce Watts and Strogatz (1998) and apply to new ecological data
bernibra/Quantitative-Approaches-practical2
This is a jupyter notebook for the second practical session for the "Quantitative Approaches" course at ETH
bernibra/shiny-template
A shiny template for putting together nice maps and different plot types.
bernibra/svelte-starter-test
I love the Pudding newsletter. Hopefully this is the first step towards one day publishing there.