This is an experimental prototype for indexing ClinVar data into Blacklight
This project takes data downloaded from the NCBI FTP Site, indexes that data into solr, and provides a Blacklight based interface for interacting with the data.
$ ftp ftp.ncbi.nlm.nih.gov/
(enter 'anonymous' for the login and your email address for the password)
ftp > cd pub/clinvar/xml
ftp > get ClinVarFullRelease_00-latest.xml.gz
ftp > exit
$ gunzip ClinVarFullRelease_00-latest.xml.gz
- Ruby 2.3
- Blacklight 6
- Ruby gems documented via Gemfile
- Run
rake ci
to run tests - CI build via travis-ci.org
To do:
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Ruby version
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System dependencies
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Configuration
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Database creation
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Database initialization
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How to run the test suite
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Services (job queues, cache servers, search engines, etc.)
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Deployment instructions
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...