beyondpie/CEMBA_wmb_snATAC

Issues

• TODO: provide cell meta directly in the repo

  #21 opened 3 months ago by beyondpie
  1

• cellType cov weighted loss function is ambiguous

  #18 opened 5 months ago by GitHUB-ZYD
  2

• Provide region-specific cCREs (and enhancers) cluster-specific cCREs (and enhancers)

  #14 opened 7 months ago by beyondpie
  0

• Integration with MERFISH to provide spatial results.

  #17 opened 6 months ago by beyondpie
  0

• update README to include how we generate each figure

  #16 opened 6 months ago by beyondpie
  0

• Upload liftOver-related codes and data for conservation analysis

  #15 opened 6 months ago by beyondpie
  0

• Consultation on snATAC-seq Data Analysis for differential peak analysis

  #12 opened 8 months ago by RuiyuRayWang
  7

• provide bedpe files like 2021 format.

  #9 opened 8 months ago by beyondpie
  11

• Provide GithubPage like Allen's whole mouse brain

  #13 opened 8 months ago by beyondpie
  0

• share the supplementary data with more details

  #11 opened 9 months ago by beyondpie
  1

• data

  #10 opened 10 months ago by gouxiaojuan
  6

• organize 00.data preprocess

  #4 opened a year ago by beyondpie
  1

• PanicException: called `Result::unwrap()` on an `Err` value: H5Dread(): can't read data: file read failed

  #8 opened a year ago by jayluo2
  19

• RuntimeError: neither 'fragment_single' nor 'fragment_paired' is present in the '.obsm'

  #6 opened a year ago by jayluo2
  10

• provide both L4-cluster level and subclass-level bed files.

  #7 opened a year ago by beyondpie
  0

• rename 17, 18, 19 directory labels in codes

  #5 opened a year ago by beyondpie
  0