bgfritz1

debarcer

Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes

debarcer_tobias

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

Pa_Subpopulations

Code to reproduce analysis for Subpopulations Manuscript

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

RNAseq_TapeStripsVsBiopsy

Code for reproducing the figures and analysis in, "RNA-sequencing of paired tape-strips and skin biopsies in atopic dermatitis reveals key differences"

Calscreener_tools

Scripts for manipulating Calscreener data

RNAseq_protocols

RNAseq_protocols

WoundClassification2021

Scripts for reproducing the analysis from "Transcriptomic Fingerprint of Bacterial Infection in Lower Extremity Ulcers"

bgfritz1/debarcer

Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes

bgfritz1/debarcer_tobias

bgfritz1/host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

bgfritz1/Pa_Subpopulations

Code to reproduce analysis for Subpopulations Manuscript

bgfritz1/rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

bgfritz1/rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

bgfritz1/RNAseq_TapeStripsVsBiopsy

Code for reproducing the figures and analysis in, "RNA-sequencing of paired tape-strips and skin biopsies in atopic dermatitis reveals key differences"

bgfritz1/snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

bgfritz1/Tandem_RNAseq

Costerton Biofilm Center RNA-sequencing analysis pipeline

bgfritz1/utility_scripts