bghannad
Computational Neuroscientist/physicist @ The Max Planck Institute for Neurobiology of Behavior - caesar
@research-center-caesar Bonn, Germany
bghannad's Stars
DeepLabCut/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
basler/pypylon
The official python wrapper for the pylon Camera Software Suite
NeuromatchAcademy/course-content-dl
NMA deep learning course
cortex-lab/Suite2P
Tools for processing 2P recordings
xiuyechen/FishExplorer
interactive analysis of calcium imaging data from larval zebrafish
carsen-stringer/FaceMapOriginal
original FaceMap code which writes a binary file of movie before processing (good for compressed movies, otherwise slow).
carsen-stringer/suite2p
cell detection in calcium imaging recordings
flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
NeuromatchAcademy/course-content
NMA Computational Neuroscience course
vdumoulin/conv_arithmetic
A technical report on convolution arithmetic in the context of deep learning
CRBS/cdeep3m
Please go to https://github.com/CRBS/cdeep3m2 for most recent version
NervanaSystems/neon
Intel® Nervana™ reference deep learning framework committed to best performance on all hardware
elhuhdron/emdrp
volumetric reconstruction of 3D cellular-resolution imaging data
google/ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
CAVEconnectome/PyChunkedGraph
Data backend for fast proofreading of cell segmentations in connectomics datasets
dask/dask-tutorial
Dask tutorial
ELEKTRONN/ELEKTRONN
A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
StructuralNeurobiologyLab/SyConn
Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
fastai/fastprogress
Simple and flexible progress bar for Jupyter Notebook and console
SWARAJkumar/Computational-Neuroscience
eriklindernoren/PyTorch-GAN
PyTorch implementations of Generative Adversarial Networks.
mhaft/DeepVess
jantic/DeOldify
A Deep Learning based project for colorizing and restoring old images (and video!)
fastai/fastai
The fastai deep learning library
fastai/courses
fast.ai Courses
seung-lab/fpzip
Cython bindings for fpzip, a floating point image compression algorithm.
seung-lab/compressedseg
compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.
seung-lab/igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
seung-lab/cloud-volume
Read and write Neuroglancer datasets programmatically.
janelia-flyem/compressedseg