agat - should the output be GFF3?

[TomHarrop]

Hi, just a question. AGAT seems to output GFF3, e.g. agat_convert_sp_gxf2gxf.pl produces files with the header

 ##gff-version 3 

The wrapper plain GFF, e.g.

galaxytools/tools/agat/agat.xml

Line 338 in d18fae9

<data name="annotation_gff" format="gff" label="${tool.name} on ${on_string}: annotation file (GFF)">

Workaround on Galaxy is to Edit Dataset Atrributes and save it as gff3.

Could we just change the wrapper to output gff3 or gff1 is really needed by this tool?

Thanks!

[bgruening]

Yes, lets change the wrapper! Can you do it? Please also bump the version number.