molgenis BIBBOX application

This container can be installed as BIBBOX APP or standalone.

After the docker installation follow these instructions.

Standalone Installation

Clone the github repository. If necessary change the ports in the environment file .env and the volume mounts in docker-compose.yml.

git clone https://github.com/bibbox/app-molgenis
cd app-molgenis
docker network create bibbox-default-network
docker-compose up -d

The main App can be opened and set up at:

http://localhost:80

Install within BIBBOX

Visit the BIBBOX page and find the App by its name in the store. Click on the symbol and select install. Then fill the parameters below and name your App, click install again.

Docker Images used

Install Environment Variables

ADMIN_PASSWORD = Admin Password, please change for production
DB_PASSWORD = Database password, please change for production

The default values for the standalone installation are:

ADMIN_PASSWORD = admin
DB_PASSWORD = molgenis

Mounted Volumes

molgenis/molgenis-app Container

./data/home/molgenis:/home/molgenis

docker.elastic.co/elasticsearch/elasticsearch Container

./data/usr/share/elasticsearch/data:/usr/share/elasticsearch/data

molgenis/molgenis-frontend Container

./data/backend.conf:/etc/nginx/proxy.d/backend.conf

docker.elastic.co/kibana/kibana Container

./data:/root/dashboard:ro

minio/minio Container

/data/minio/data:/data

postgres Container

./data/var/lib/postgresql/data:/var/lib/postgresql/data