bigdatagenomics/adam

Issues

• Fix deploy snapshot Github Action failures

  #2407 opened 3 months ago by heuermh
  0

• Update Spark dependency version to 3.5.2

  #2405 opened 3 months ago by heuermh
  0

• Refactoring Error Logging Inconsistencies in MdTag.scala

  #2401 opened 4 months ago by joonkang-git
  0

• Update Spark dependency version to 3.5.x

  #2398 opened 8 months ago by heuermh
  1

• Duplicate 1.0.1 entry in CHANGES.md

  #2396 opened a year ago by heuermh
  0

• Update Avro dependency version to 1.11.1

  #2379 opened 2 years ago by heuermh
  0

• Update Spark dependency version to 3.3.0

  #2375 opened 2 years ago by heuermh
  1

• BAM/BED to parquet

  #2376 opened 2 years ago by darked89
  5

• Parquet/Avro schema mismatch in transformFragments

  #2387 opened a year ago by heuermh
  1

• Missing Fastq reads

  #2385 opened 2 years ago by SidWeng
  1

• Update Spark dependency version to 3.3.2

  #2383 opened 2 years ago by heuermh
  0

• Parameter warnings for scala-maven-plugin

  #2382 opened 2 years ago by heuermh
  0

• Update Spark dependency version to 3.3.1

  #2377 opened 2 years ago by heuermh
  0

• Update bdg-utils dependency version to 1.0

  #2370 opened 3 years ago by heuermh
  0

• Update bdg-formats dependency version to 1.0

  #2371 opened 3 years ago by heuermh
  0

• Add sort output parameter to countKmers/countSliceKmers

  #2363 opened 3 years ago by heuermh
  0

• Add references parameter to transformSequences/transformSequences/countKmers etc.

  #2364 opened 3 years ago by heuermh
  2

• Add maximum length parameter to countSliceKmers

  #2365 opened 3 years ago by heuermh
  0

• Kmers overcounted in Slice countKmers

  #2362 opened 3 years ago by heuermh
  0

• Features without strand NPE in printFeatureAttributes

  #2357 opened 3 years ago by heuermh
  0

• Update Spark dependency version to 3.2.1

  #2353 opened 3 years ago by heuermh
  0

• Benchmark spark.kryo.unsafe config performance

  #2303 opened 3 years ago by heuermh
  1

• Add CITATION.cff for citation(s)

  #2329 opened 3 years ago by heuermh
  1

• loadBam cannot load BAM files hosted on SRA s3 archive

  #2295 opened 3 years ago by heuermh
  1

• Parse error in interval list header

  #2355 opened 3 years ago by heuermh
  0

• error when saveAsPairedFastq files

  #2350 opened 3 years ago
  2

• Note Bioconda and Homebrew in readme and installation docs

  #2348 opened 3 years ago by heuermh
  0

• Note Spark version 3.2.0 or later is now required

  #2339 opened 3 years ago by heuermh
  0

• StackOverflowError in avro SpecificDatumWriter

  #2349 opened 3 years ago by heuermh
  1

• Migrate Github Actions JDK from 'adopt' to 'temurin'

  #2346 opened 3 years ago by heuermh
  0

• Update bdg-formats to 0.17.0 release

  #2341 opened 3 years ago by heuermh
  0

• Update pom.xml url to Github repository

  #2342 opened 3 years ago by heuermh
  0

• Remove Github Pages environment and branch

  #2313 opened 3 years ago by heuermh
  1

• Add proteinId field to Feature

  #2333 opened 3 years ago by heuermh
  0

• Update Parquet to 1.12.x, Avro to 1.10.x, remove build workarounds

  #2336 opened 3 years ago by heuermh
  0

• Update Spark dependency version to 3.2.0

  #2331 opened 3 years ago by heuermh
  0

• Extract multi region in one shot

  #2334 opened 3 years ago
  2

• Add Scala 2.13 to build

  #2335 opened 3 years ago by heuermh
  0

• saveAsSam format

  #2321 opened 3 years ago by hxdhan
  9

• Missing SAM header when using pipe API

  #2322 opened 3 years ago by heuermh
  9

• Update bdg-formats dependency version to 0.16.0

  #2328 opened 3 years ago by heuermh
  1

• Is it possible to do saveAsSam() parallelly ?

  #2326 opened 3 years ago by SidWeng
  4

• Add sample to Sequence, Slice, and Read

  #2319 opened 3 years ago by heuermh
  0

• Add CRAM reference argument to CLI for loading alignments and fragments

  #2293 opened 4 years ago by heuermh
  4

• Update Spark dependency version to 3.1.2

  #2317 opened 3 years ago by heuermh
  0

• Update Spark dependency version to 3.1.1

  #2302 opened 4 years ago by heuermh
  0

• Migrate CI off Jenkins

  #2307 opened 4 years ago by heuermh
  0

• Provide access to header to model conversions

  #2304 opened 4 years ago by heuermh
  0

• printInfoFields does not display value of Type=Flag VCF INFO fields

  #2299 opened 4 years ago by heuermh
  1

• Update Spark dependency version to 3.0.2

  #2300 opened 4 years ago by heuermh
  0