bigdatagenomics/adam

Issues

• Duplicate version 0.33.0 release notes in changelog

  #2290 opened 4 years ago
  0

• adam-submit: Not able to transform fasta file to adam format.

  #2288 opened 4 years ago
  3

• Bump Scala 2.12 dependency version to 2.12.10

  #2287 opened 4 years ago
  0

• Default build to Hadoop 3.x

  #2285 opened 4 years ago
  0

• Remove Scala 2.11.x from build and release matrix

  #2284 opened 4 years ago
  0

• Remove Spark 2.x from build and release matrix

  #2283 opened 4 years ago
  0

• Spare not needed groupBy when calling toFragments() on AlignmentDataset

  #2281 opened 4 years ago
  4

• Improve Ensembl VEP mapping to TranscriptEffect

  #2279 opened 4 years ago
  1

• ArrayIndexOutOfBoundsException when operating on VCF DataFrame doesn't indicate bad row

  #2275 opened 3 years ago
  4

• Update Spark dependency to version 3.0.1

  #2273 opened 4 years ago
  0

• saveAsSam converts null mapping qualities to 0 instead of 255

  #2272 opened 4 years ago
  0

• Add cite DOI link to command line --version output

  #2270 opened 4 years ago
  0

• Support Hadoop 3.2.x in build

  #2267 opened 4 years ago
  1

• Default build to Spark 3/Scala 2.12

  #2266 opened 4 years ago
  0

• Jenkins build not producing Spark 3/Scala 2.12 snapshot artifacts

  #2265 opened 4 years ago
  1

• Use SCALA_VERSION instead of SCALAVER in Jenkins config

  #2264 opened 4 years ago
  1

• Update Spark dependency version to 2.4.6

  #2262 opened 4 years ago
  0

• Spark Issue + Could not initialize class org.apache.spark.sql.execution.datasources.parquet.ParquetSchemaConverter

  #2261 opened 5 years ago
  7

• Bump slf4j dependency to 1.7.30+

  #2259 opened 5 years ago
  0

• Load Multiple Files into the ADAM Variant schema

  #2258 opened 4 years ago
  6

• Add deprecated annotations for code to be removed to support Spark 3

  #2254 opened 5 years ago
  0

• Update bdg-utils dependency version to 0.2.16

  #2252 opened 5 years ago
  0

• Consider ParseMode to replace ValidationStringency

  #2251 opened 5 years ago
  1

• NoClassDefError org.apache.spark.AccumulableParam on Spark 3.0.0 preview

  #2250 opened 4 years ago
  1

• Bump Apache Spark dependency version to 2.4.5

  #2248 opened 5 years ago
  0

• All of my samples fail due to adam erroneously thinking there are different numbers of reads in r1 and r2.

  #2247 opened 4 years ago
  10

• FastqRecordConvert incompatible with single tube long fragment read headers

  #2246 opened 5 years ago
  3

• Bam files with no unmapped reads fails to sort

  #2242 opened 5 years ago
  2

• Unit test failure when building from release tarball

  #2241 opened 5 years ago
  4

• Adam without HDFS

  #2238 opened 5 years ago
  10

• Create a build configuration for Spark 3 preview release(s)

  #2237 opened 4 years ago
  2

• Github changes plugin used in release script does not use two-factor authentication

  #2235 opened 5 years ago
  0

• Update bdg-formats dependency version to 0.15.0

  #2233 opened 5 years ago
  0

• 7 tests failing on HEAD

  #2231 opened 5 years ago
  13

• Jenkins build status icon link is broken

  #2228 opened 5 years ago
  0

• BUILD FAILURE - Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.5.0:java

  #2227 opened 5 years ago
  10

• I'm failing to use this package

  #2225 opened 5 years ago
  11

• GenomicDataset saveAsParquet incorrectly named parameter compressCodec

  #2224 opened 5 years ago
  1

• Drop python 2 support for pyadam

  #2221 opened 4 years ago
  2

• Add printAttributes methods for Reads, Sequences, Slices

  #2219 opened 5 years ago
  0

• Add default Set.empty to printAttributes key method parameter

  #2218 opened 5 years ago
  0

• Add Avro-friendly ctrs in rdd.variant package

  #2215 opened 5 years ago
  0

• Save as CRAM precondition incorrectly fails on sorted Parquet input

  #2214 opened 5 years ago
  0

• Development version commit pushed to release branches

  #2213 opened 5 years ago
  1

• Cannot resolve adam-shade-spark2_2.11 dependency

  #2211 opened 5 years ago
  1

• Bump bdg-formats dependency version to 0.14.0

  #2208 opened 5 years ago
  0

• Bump Apache Spark dependency version to 2.4.4

  #2202 opened 5 years ago
  0

• Refactor Dataset save methods for consistency

  #2199 opened 5 years ago
  2

• Add missing VariantContextDataset.save method

  #2198 opened 5 years ago
  0

• Add missing loadVariantContexts(String, ValidationStringency) method

  #2197 opened 5 years ago
  0