bigdatagenomics/deca

Issues

• Bizarrely large END position in the output file

  #40 opened 4 years ago by lgh2624
  0

• Using CRAM files

  #39 opened 5 years ago by katherinef
  2

• Executor heartbeat timed out error message

  #38 opened 5 years ago by rajitz
  0

• supplying multiple BAM files

  #37 opened 5 years ago by rajitz
  5

• Error running deca cnv : java.lang.OutOfMemoryError: GC overhead limit exceeded

  #36 opened 5 years ago by lakhujanivijay
  2

• java.lang.UnsupportedOperationException: empty collection when running normalize_and_discover or CNV

  #35 opened 5 years ago by williambrandler
  0

• Update ADAM dependency version to 0.27.0

  #34 opened 6 years ago by heuermh
  0

• Move netlib into a profile

  #26 opened 7 years ago by fnothaft
  1

• Break up CNVs that span multiple contigs

  #22 opened 7 years ago by fnothaft
  0

• DECA will fail if a single partition is empty

  #21 opened 7 years ago by fnothaft
  0

• Bump to ADAM 0.23.0

  #17 opened 7 years ago by fnothaft
  0

• Bump to ADAM 0.23.0-SNAPSHOT

  #24 opened 7 years ago by fnothaft
  0

• Support emitting single base pair coverage

  #23 opened 7 years ago by fnothaft
  0

• README says make deploy

  #19 opened 7 years ago by fnothaft
  0

• Update README with bdgenomics.workflows pip install

  #16 opened 7 years ago by fnothaft
  0

• I/O improvements

  #12 opened 7 years ago by fnothaft
  0

• Set up coveralls

  #2 opened 7 years ago by fnothaft
  1

• Add command for running on a Spark cluster

  #8 opened 7 years ago by fnothaft
  1

• Add example of how to run using Toil

  #9 opened 7 years ago by fnothaft
  0

• Disable debug logging in deca-submit

  #10 opened 7 years ago by fnothaft
  0

• Improve matrix size error message

  #6 opened 7 years ago by fnothaft
  0

• Forked vs transferred repository

  #4 opened 7 years ago by heuermh
  0

• Get CI back into action

  #1 opened 7 years ago by fnothaft
  0