A package of single-node and distributed workflows for running Big Data Genomics tools using Toil.
For detailed documentation, see our readthedocs site.
We support Workflows for running:
- Copy number variant calling using DECA.
The latest release of bdgenomics.workflows can be installed using Pip into a virtualenv. You must install Toil first:
$ virtualenv bdg-workflows $ $ . bdg-workflows/bin/activate $ $ pip install toil==3.10.1 $ $ pip install bdgenomics.workflows $ $ bdg-deca
To install from source:
$ virtualenv bdg-workflows $ $ . bdg-workflows/bin/activate $ $ pip install toil==3.10.1 $ $ make develop $ $ bdg-deca
Currently, we only support Python 2. Python 3 support is forthcoming.