bihealth/sodar-server

Issues

• Cleanup and prepare v0.14.3

  #1933 opened 2 months ago by mikkonie
  0

• Add retrying for BatchCalculateChecksumTask exceptions

  #1941 opened a month ago by mikkonie
  0

• Add logging for BatchCalculateChecksumTask exceptions

  #1940 opened a month ago by mikkonie
  1

• Add opt-out settings for email notifications

  #1939 opened a month ago by mikkonie
  0

• Upgrade to django-sodar-core v1.0.0

  #1922 opened 3 months ago by mikkonie
  0

• Upgrade dependencies for v0.14.3

  #1930 opened 3 months ago by mikkonie
  0

• Fix README badge rendering

  #1938 opened 2 months ago by mikkonie
  1

• IGV session merging opens a new session

  #1932 opened 2 months ago by mikkonie
  3

• Add support for multiple VCF files in germline IGV sessions

  #1937 opened 2 months ago by mikkonie
  0

• Update REST API versioning for SODAR Core v1.0

  #1936 opened 2 months ago by mikkonie
  0

• Grant contributors and guests read access to all landing zones within project

  #1935 opened 2 months ago by mikkonie
  0

• Grant owners and delegates iRODS read/write access to contributor zones

  #1934 opened 2 months ago by mikkonie
  0

• Add documentation for Cyberduck iRODS access

  #1931 opened 2 months ago by sellth
  1

• Allow setup behind reverse proxy

  #1917 opened 3 months ago by HaraldWilhelmi
  1

• Review irodsbackend API and session handling in taskflowbackend

  #1907 opened 3 months ago by mikkonie
  1

• Source cell editing not working in assay table after row insert

  #1928 opened 3 months ago by mikkonie
  2

• Process not linked to existing node by name when adding new row in sheet editor

  #1904 opened 3 months ago by sellth
  5

• Duplicate rows created on ISA-Tab export when splitting with unnamed data files

  #1926 opened 3 months ago by mikkonie
  1

• Render pooled/split rows on row insert in sheet editor

  #1927 opened 3 months ago by mikkonie
  0

• Handle missing family column in germline study cache update

  #1921 opened 3 months ago by mikkonie
  4

• IGV omit setting defaults not correctly set on project creation

  #1925 opened 3 months ago by mikkonie
  1

• Rename get_igv_omit_override(), refactor use

  #1924 opened 3 months ago by mikkonie
  1

• Add glob pattern and path support for SHEETS_IGV_OMIT_*

  #1923 opened 3 months ago by mikkonie
  1

• Add additional functionality to IGV omit patterns for VCF/BAM/CRAM files

  #1920 opened 3 months ago by mikkonie
  1

• Add optional detailed landing zone taskflow output

  #1919 opened 3 months ago by mikkonie
  0

• Project lock failure can update status of finished landing zone with rapid request spamming

  #1909 opened 3 months ago by mikkonie
  1

• Add landingzones taskflow task tests

  #1916 opened 3 months ago by mikkonie
  0

• Germline study app helper used in cancer study app plugin tests

  #1914 opened 3 months ago by mikkonie
  1

• Add CRAM file support for IGV in study plugins

  #1908 opened 3 months ago by mikkonie
  2

• Add landing zone taskflow queue?

  #1910 opened 3 months ago by mikkonie
  0

• Combine IrodsDataRequestModifyMixin timeline helpers

  #1913 opened 3 months ago by mikkonie
  1

• Add extra data to IrodsDataRequest create/update timeline events

  #1912 opened 3 months ago by mikkonie
  1

• File potentially lost if iRODS connection times out during landing zone moving

  #1893 opened 4 months ago by mikkonie
  0

• Process name editing not enabled by default when adding new row in sheet editor

  #1911 opened 3 months ago by mikkonie
  1

• Crash in landing_zone_create flow with large project and create/restrict collections

  #1905 opened 3 months ago by mikkonie
  3

• Uncaught exceptions in SetAccessTask

  #1906 opened 3 months ago by mikkonie
  1

• Timeline status update may fail on landing zone deletion

  #1894 opened 4 months ago by mikkonie
  4

• Upgrade to django-sodar-core v0.13.4

  #1899 opened 4 months ago by mikkonie
  1

• Landing zone status updating not working in project details card

  #1902 opened 4 months ago by mikkonie
  1

• Refactor IrodsStatisticsAjaxView and related JQuery

  #1903 opened 4 months ago by mikkonie
  1

• Add landing zone counts by status type in siteinfo

  #1898 opened 4 months ago by mikkonie
  1

• Add taskflowbackend settings to siteinfo

  #1901 opened 4 months ago by mikkonie
  1

• Update readthedocs setup for building manual

  #1897 opened 4 months ago by mikkonie
  2

• Increase default taskflow iRODS connection timeout

  #1900 opened 4 months ago by mikkonie
  1

• Sheet creation error from slashes in investigation title

  #1896 opened 4 months ago by mikkonie
  2

• Add assay based access control to sample sheet data

  #1895 opened 4 months ago by mikkonie
  0

• Properly enable superuser landing zone controls for locked zones

  #1892 opened 4 months ago by mikkonie
  0

• Validate and sanitize IRODS_ROOT_PATH in IrodsAPI.get_root_path()

  #1891 opened 4 months ago by mikkonie
  1

• Use get_root_path() consistently within IrodsAPI

  #1890 opened 4 months ago by mikkonie
  1

• Invalid alternative root path forming in IrodsAPI.get_path()

  #1889 opened 4 months ago by mikkonie
  1