varfish-org/varfish-cli

Issues

• extend for new case_import rest api

  #130 opened 2 months ago by stolpeo
  0

• AttributeError: module 'pydantic' has no attribute 'ConfigDict'

  #104 opened 9 months ago by flokraft85
  11

• dragen-to-bam-qc writes wrong JSON

  #101 opened 9 months ago by holtgrewe
  0

• Adjust varfish-server manual for updates in CLI interface

  #71 opened a year ago by holtgrewe
  0

• Extend phenopacket YAML bootstrapping

  #73 opened a year ago by holtgrewe
  0

• Implement support for new-style imports

  #70 opened a year ago by holtgrewe
  3

• Implement API versioning in varfish-cli

  #6 opened 3 years ago by holtgrewe
  0

• Conversion from DRAGEN QC files to legacy coverage qc format.

  #85 opened 9 months ago by holtgrewe
  0

• Creating a small var query from a shortcut results in an error

  #40 opened a year ago by stolpeo
  2

• Help manual is missing options

  #38 opened a year ago by danidey
  1

• Listing cases points to wrong URL

  #39 opened a year ago by stolpeo
  1

• Genome build check method crashes for empty results

  #12 opened a year ago by eudesbarbosa
  1

• `requirements/base.txt`: 'install_requires' must be a string or list of strings containing valid project/version requirement specifiers; Expected end or semicolon (after version specifier

  #28 opened a year ago by your-highness
  0

• Increase test coverage

  #1 opened a year ago by holtgrewe
  1

• Consider using OpenStack's pbr library

  #8 opened a year ago by holtgrewe
  1

• Migrate to pydantic rather than attrs

  #49 opened a year ago by holtgrewe
  0

• Migrate argparse code to typer

  #48 opened a year ago by holtgrewe
  0

• list cases does not work anymore on Berlin Instance

  #27 opened a year ago by xiamaz
  0

• Use polyleven over levensthein

  #26 opened 2 years ago by holtgrewe
  0

• CLI switch --no-verify-ssl ignored

  #11 opened 2 years ago by holtgrewe
  0

• Implement release-please

  #30 opened 2 years ago by holtgrewe
  0

• Implement CLI for new varannos app

  #24 opened 2 years ago by holtgrewe
  0

• Release v0.3.5

  #22 opened 2 years ago by holtgrewe
  0

• Allow upload per-case gene annotations file

  #20 opened 2 years ago by holtgrewe
  0

• Add get case info to varfish cli

  #18 opened 2 years ago by xiamaz
  0

• Latest varfish-{annotator,server} need more columns for

  #16 opened 2 years ago by holtgrewe
  0

• Release v0.3.3

  #15 opened 2 years ago by holtgrewe
  0

• Database info files are not distinguished between Smallvars and SVs

  #13 opened 2 years ago by stolpeo
  2

• Implement small variant query REST API

  #7 opened 3 years ago by holtgrewe
  0

• Catch 400 VarFish server response

  #5 opened 3 years ago by stolpeo
  1

• Add support for project manipulation

  #3 opened 4 years ago by holtgrewe
  0

• Add documentation

  #2 opened 4 years ago by holtgrewe
  0