Bimber Lab Internal Projects
This holds internal projects from the Bimber Lab. For public projects, see: https://github.com/bimberlab
Pinned Repositories
BimberLabKeyModules
This holds LabKey Server modules used by the Bimber Lab that are private or unlikely to be of general interest
CellMembrane
An R package with wrappers and pipelines for single cell RNA-seq analysis
deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
docker-base
Designed to build a base docker image for R packages
mcc-website
This project holds the content for the MCC public website
OOSAP
OHSU-ONPRC Single-cell Analysis Package
Rdiscvr
This in an R package that provides helper functions to query data in LabKey/DISCVR modules.
ShinySDA
Shiny tool to load and browse SDA objects
ShinySDAscSeq
A shinydashboard template
ShinySeuratHelper
Shiny Seurat Helper (SSH)
Bimber Lab Internal Projects's Repositories
bimberlabinternal/CellMembrane
An R package with wrappers and pipelines for single cell RNA-seq analysis
bimberlabinternal/OOSAP
OHSU-ONPRC Single-cell Analysis Package
bimberlabinternal/BimberLabKeyModules
This holds LabKey Server modules used by the Bimber Lab that are private or unlikely to be of general interest
bimberlabinternal/deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
bimberlabinternal/docker-base
Designed to build a base docker image for R packages
bimberlabinternal/mcc-website
This project holds the content for the MCC public website
bimberlabinternal/Rdiscvr
This in an R package that provides helper functions to query data in LabKey/DISCVR modules.
bimberlabinternal/ShinySDA
Shiny tool to load and browse SDA objects
bimberlabinternal/ShinySDAscSeq
A shinydashboard template
bimberlabinternal/ShinySeuratHelper
Shiny Seurat Helper (SSH)
bimberlabinternal/DevOps
Tools to manage software and repositories for the Bimber Lab
bimberlabinternal/GxfUtils
Yet Another Set of Tools to Manipulate GFF/GTF Files
bimberlabinternal/LabDevKitModules
Contains the LDK LabKey module, which has lower-level code and is a dependency of several other modules
bimberlabinternal/library
Reference V, D, J, C genes
bimberlabinternal/loe
:exclamation: This is a read-only mirror of the CRAN R package repository. loe — Local Ordinal Embedding
bimberlabinternal/VariantAnnotation
A set of scripts to build custom funcotator-compatible data sources
bimberlabinternal/WorkbookSync