Biomedical Statistics and Data Science @ LMU/HMGU Munich
Code repository of the Biomedical Statistics and Data Science Group @ LMU/HMGU Munich
Munich/New York
Pinned Repositories
BacSC
Optimized processing of bacterial single-cell data
c-lasso
c-lasso: a Python package for constrained sparse regression and classification
Causal_Microbiome_Tutorial
Causal inference framework for environment-microbiome data applied to American Gut data.
deepregression
Fitting Semi-Structured Deep Distributional Regression in R
NetCoMi
Network Comparison for Microbial Compositional Data
NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
q2-gglasso
QIIME 2 plugin which contains algorithms for solving General Graphical Lasso (GGLasso) problems
SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
tascCODA
tree-aggregated compositional analysis for high-throughput sequencing data
trac
Tree-based Aggregation of Compositional Data
Biomedical Statistics and Data Science @ LMU/HMGU Munich's Repositories
bio-datascience/tascCODA
tree-aggregated compositional analysis for high-throughput sequencing data
bio-datascience/Causal_Microbiome_Tutorial
Causal inference framework for environment-microbiome data applied to American Gut data.
bio-datascience/BacSC
Optimized processing of bacterial single-cell data
bio-datascience/ProDG
bio-datascience/q2-gglasso
QIIME 2 plugin which contains algorithms for solving General Graphical Lasso (GGLasso) problems
bio-datascience/tascCODA_reproducibility
Reproductibility repository for "tascCODA: Bayesian tree-aggregated analysis of compositional amplicon and single-cell data"(Ostner, Müller, 2021))
bio-datascience/trac
Tree-based Aggregation of Compositional Data
bio-datascience/bio-datascience.github.io
This is the repository for our group's webpage
bio-datascience/coda24
Course website mini-course
bio-datascience/comp-iv
Collection of methods for instrumental variable settings with a compositional cause.
bio-datascience/MetaIBS
Meta-analysis of microbiome composition measured by 16S rRNA seq in IBS case-control studies
bio-datascience/NetCoMi
Network Comparison for Microbial Compositional Data
bio-datascience/PDE-STRIDE
This repository contains codes and data-sets for the PDE inference from limited spatio-temporal data
bio-datascience/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
bio-datascience/asteRIa
bio-datascience/atacama-soil-microbiome-tutorial
bio-datascience/Bacdiving
Bacdiving accesses the Bacterial Diversity Metadatabase BacDive and provides various visualization options.
bio-datascience/brain_challenge
Network Analysis and Sex Prediction Based on Whole Brain Connectome
bio-datascience/Drug-interactions-HCS
bio-datascience/Global-rRNA-Univeral-Metabarcoding-of-Plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
bio-datascience/lassonet
An implementation of LassoNet for arbitrary network architectures.
bio-datascience/lounsbery
bio-datascience/Microbial-Interactions
bio-datascience/nbfar
bio-datascience/omd
Code for ocean mover's distance (OMD) project.
bio-datascience/overoptimism-microbiome
bio-datascience/pertpy
Perturbation Analysis in the scverse ecosystem.
bio-datascience/q2-dummy
Package for testing q2-plugin development
bio-datascience/scCODA
A statistical test for compositional changes in scRNA
bio-datascience/viroprofiler
A containerized bioinformatics pipeline for viral metagenomic data analysis