bio-unach
Laboratorio de Bioinformática de la Universidad Adventista de Chile
Universidad Adventista de ChileChillán
bio-unach's Stars
salbrec/seqQscorer
BiotechPedro/microSTASIS
R package to be released in Bioconductor v3.16 for the assessment of microbiota stability across longitudinal samples
HRGV/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
medvedevgroup/SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
baoxingsong/AnchorWave
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
schneebergerlab/syri
Synteny and Rearrangement Identifier
gem-pasteur/PanACoTA
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
ComparativeGenomicsToolkit/cactus
Official home of genome aligner based upon notion of Cactus graphs
AliTVTeam/AliTV
Visualize whole genome alignments as linear maps
Edinburgh-Genome-Foundry/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
AnantharamanLab/METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
KIT-IBG-5/mdmcleaner
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
ibe-uw/tiara
tiara – a tool for DNA sequence classification
inab/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
rcedgar/muscle
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
HIT-ImmunologyLab/CRISPRimmunity
Open source code for CRISPRimmunity
Russel88/CRISPRCasTyper
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
yphsieh/16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
AnantharamanLab/PropagAtE
Prophage Activity Estimator
adamhockenberry/bacphlip
A python library for predicting phage lifestyle based on genome sequence
soedinglab/WIsH
Predict prokaryotic host for phage metagenomic sequences
aziele/phirbo
Predict prokaryotic hosts for phage (meta) genomic sequences
WeiliWw/VirHostMatcher-Net
VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.
jessieren/VirHostMatcher
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
felipehcoutinho/RaFAH
funkyheatmap/funkyheatmap
Visualising data frames as funky heatmaps 📊
dusadrian/venn
Draw Venn Diagrams
chasewnelson/OLGenie
Program for estimating dN/dS in overlapping genes (OLGs)
WCSCourses/ViralBioinfAsia2022
Base for the Viral Genomics and Bioinformatics Repository
PoonLab/ovrf-viz
Review article on overlapping reading frames in viruses