bioarpit1
Postdoc fellow in Hawkinslab @Medicalgenetics/Genomesciences
University of washingtonSeattle
Pinned Repositories
100daysofcode-with-python-course
Course materials and handouts for #100DaysOfCode in Python course
Analysis
Pipelines and scripts for analyzing sequencing data
Arpit-Mishra-Resume
arpit_starrseq_testdata
ATACPrimerTool
Primer design for ATAC-qPCR
beautiful-jekyll
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
bioarpit1.github.io
chicp-docker
CHiCP installation using Docker containers
Chromosomal-Conformation-Course
Bioinformatic material related to the course
Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
bioarpit1's Repositories
bioarpit1/100daysofcode-with-python-course
Course materials and handouts for #100DaysOfCode in Python course
bioarpit1/Analysis
Pipelines and scripts for analyzing sequencing data
bioarpit1/Arpit-Mishra-Resume
bioarpit1/arpit_starrseq_testdata
bioarpit1/ATACPrimerTool
Primer design for ATAC-qPCR
bioarpit1/beautiful-jekyll
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
bioarpit1/bioarpit1.github.io
bioarpit1/Chromosomal-Conformation-Course
Bioinformatic material related to the course
bioarpit1/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
bioarpit1/deeplearning-biology
A list of deep learning implementations in biology
bioarpit1/dse200-notebooks
bioarpit1/epigenometracks
test browser track
bioarpit1/git_project
bioarpit1/GitIntro
Git tutorial materials
bioarpit1/harmjan
bioarpit1/hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
bioarpit1/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
bioarpit1/jupyter-genomics
A collection of Jupyter notebooks authored by the UCSD Center for Computational Biology & Bioinformatics (http://compbio.ucsd.edu). These include methods on utilizing cloud computing resources and analysis of data from next-generation sequencing, systems biology, and microbiome.
bioarpit1/mars
Dunes formation in low pressure environment on mars.
bioarpit1/MPRAflow
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
bioarpit1/planets
bioarpit1/plotly.py
An interactive, browser-based graphing library for Python :sparkles:
bioarpit1/resume
Arpit Mishra resume Dec 2020
bioarpit1/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
bioarpit1/scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
bioarpit1/starrseq_test
test data for barcoded starr seq
bioarpit1/statsintro_python
Python modules and IPython Notebooks, for the book "Introduction to Statistics With Python"
bioarpit1/TLA_analysis
TLA paired end data analysis from trimming to final genome coverage plots scripts
bioarpit1/tools_for_HiChIP
tools in python for HiChIP pipeline
bioarpit1/winterdataschool2020