Pinned Repositories
access2csv-docker
Dockerized tool for extracting data from the MS Access file format into CSV
ala-docker
Dockerized version of Atlas of Living Australia components
bioatlas.github.io
Welcome to Biodiversity Atlas Sweden @ GitHub
dcatap-swe-docker
Project to provide a tool for conversion of DwcA metadata to DCAT-AP
dyntaxa
R package providing access to Dyntaxa - a database of Swedish taxonomic names
generic-collectory-sweden
An empty collectory application based on collectory plugin
generic-hub-sweden
Generic hub template grails app
mirroreum
Stack for working with spatial data using R and RStudio Web / Shiny with assorted packages bundled (for example from ROpenSci)
specieslist-webapp
Species lists and traits tool
webapi
Atlas Web service API app
Biodiversity Atlas Sweden's Repositories
bioatlas/ala-docker
Dockerized version of Atlas of Living Australia components
bioatlas/bioatlas.github.io
Welcome to Biodiversity Atlas Sweden @ GitHub
bioatlas/specieslist-webapp
Species lists and traits tool
bioatlas/webapi
Atlas Web service API app
bioatlas/data-mobilization-pipeline
Various tools and examples to support reproducible workflows when migrating data or mobilizing data into various standard formats (.csv, .DwcA etc)
bioatlas/pybossa-default-theme
PyBossa default theme for the Server
bioatlas/ala-bie
The ALA's version of the BIE
bioatlas/ala-cas-5
ALA CAS 5 implementation
bioatlas/ala-collectory
A collectory application based on collectory plugin for ALA team.
bioatlas/ala-hub
ALA version of the biocache-hubs webapp
bioatlas/ampliflow
An automatic workflow for amplicon denoising and taxonomy assignment
bioatlas/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
bioatlas/archive-docker
Object storage
bioatlas/artwork
Styling and graphical assets
bioatlas/bie-index
Taxonomic search services
bioatlas/bioatlas-wordpress-theme
WordPress theme for Atlas main site.
bioatlas/configs
Config files used to define parameters specific to compute environments at different Institutions
bioatlas/dashboard
Atlas Dashboard
bioatlas/image-service
Image repository and tiling services
bioatlas/longread-dada2
R script to denoise long read amplicon sequences with DADA2
bioatlas/mol-data
Documentation of molecular data services provided by Biodiversity Atlas Sweden
bioatlas/oztrack
Web application for uploading, viewing and analysing animal tracking data
bioatlas/regions
Regions webapp
bioatlas/sds-webapp2
Sensitive Data Service webapp
bioatlas/spatial-hub
bioatlas/spatial-service
Prototype replacement for spatial portal, layers-service, analysis-service
bioatlas/taxonomy-merging
For running and preparing input to the ALA Taxonomy builder and nameindexer
bioatlas/userdetails
Atlas user management
bioatlas/workshops
Online material for various workshops
bioatlas/zoa-docker
A composition of components and services for zoological animal tracking