bioatmosphere
Studying biosphere-atmosphere interactions with interwoven theory- and data-driven approaches
Oak Ridge
Pinned Repositories
ABM
Aggregate-based model (ABM) of soil systems comprising soil aggregates as biogeochemical reactors of different sizes
AlloPart
An Algorithm of Plant Photosynthate Allocation and Partitioning
An_emergent_soil_enzyme_decomposition_model
Source data and code supporting model-based analysis of emergent properties (ECA) of soil enzyme-driven organic matter decomposition
bioatmosphere
bioatmosphere.github.io
Source code of my blog generated by Hugo
microbiome-climate-gradient
Application of DEMENTpy to a climate gradient in Southern California
microbiome-drought-legacy
A theorectical investigation into mechanisms of drought legacy formation and influencing factors in soil microbiomes using DEMENTpy.
TAM
Taming Fine-root Systems Complexity with TAM(Transport and Absorptive fine roots with Mycorrhizal funig) in ecosystem and biosphere modelling
UVAFME-VOC
An Individual-based Forest VOC Emission Model built on top of the state-of-the-art Forest Gap Model UVAFME
DEMENTpy
A spatially explicit trait- and individual-based microbial systems modelling framework
bioatmosphere's Repositories
bioatmosphere/UVAFME-VOC
An Individual-based Forest VOC Emission Model built on top of the state-of-the-art Forest Gap Model UVAFME
bioatmosphere/An_emergent_soil_enzyme_decomposition_model
Source data and code supporting model-based analysis of emergent properties (ECA) of soil enzyme-driven organic matter decomposition
bioatmosphere/microbiome-drought-legacy
A theorectical investigation into mechanisms of drought legacy formation and influencing factors in soil microbiomes using DEMENTpy.
bioatmosphere/ABM
Aggregate-based model (ABM) of soil systems comprising soil aggregates as biogeochemical reactors of different sizes
bioatmosphere/TAM
Taming Fine-root Systems Complexity with TAM(Transport and Absorptive fine roots with Mycorrhizal funig) in ecosystem and biosphere modelling
bioatmosphere/AlloPart
An Algorithm of Plant Photosynthate Allocation and Partitioning
bioatmosphere/bioatmosphere
bioatmosphere/bioatmosphere.github.io
Source code of my blog generated by Hugo
bioatmosphere/E3SM
Energy Exascale Earth System Model source code. NOTE: use "maint" branches for your work. Head of master is not validated.
bioatmosphere/microbiome-climate-gradient
Application of DEMENTpy to a climate gradient in Southern California
bioatmosphere/UVAFMEVOC2017
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
bioatmosphere/Ecosystem-Amnesia
To Accumulate to Innovate
bioatmosphere/fates
repository for the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
bioatmosphere/figure-animation
Create an animated version of static figures in scientific publications
bioatmosphere/forest-lumping
Lumping trees to model forest ecosystems
bioatmosphere/Full-House
bioatmosphere/Generative-Ecosystem
bioatmosphere/GoG
A GoG framework of predictive syntheses of pattern, diversity, and process of vegetation and microbiome
bioatmosphere/microbial-dormancy
Trait-based understanding of complexity of microbial dormancy and its impacts on organic matter decomposition
bioatmosphere/microbiome-thermal-extreme
TeMD(Thermal extreme, Microbiome, and Decomposition) with DEMENTpy at Walker Branch Watershed, Oak Ridge, Tennessee
bioatmosphere/NM-GHGs
Significance of non-microbial processes in organic matter decompositon in ecosystems across scales
bioatmosphere/OLMT
bioatmosphere/pytorch-generative
Easy generative modeling in PyTorch.