biobakery/MetaPhlAn

classify to superkingdom/kingdom level?

rjsorr opened this issue · 1 comments

I'm considering using this tool, but before I use time downloading, installing, learning, running and interpreting I would like to know if it suits my goal? Basically I want to classify my reads to the superkingdom/kingdom level before focusing on bacteria, so simply % eukaryotes, virus, Archaea and Bacteria would be desired. Is this possible without a database bias and if so how?

Thank you for creating this issue.
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