/bisplotti

Plotting package for bisulfite sequencing and methylation arrays

Primary LanguageRGNU General Public License v3.0GPL-3.0



 

bisplotti

bisplotti is a part of the greater suite of tools (BISCUIT, biscuiteer, and SeSAMe) used for both whole-genome methylation sequencing (WGMS) and methylation array data. Specifically, bisplotti is a package dedicated to producing commonly utilized exploratory data analysis and plotting.

Install from Github

## using BiocManager from CRAN
install.packages("BiocManager")
BiocManager::install("huishenlab/bisplotti")

Some rudimentary plotting ideas. Not all of these are fully implemented yet.

Multi-scale plots of solo-WCGWs

Epiread and epiallele