Pinned Repositories
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
bettercallsal
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
cpc
Working copy of Coding Potential Calculator. Will serve as an archive.
CPC2
Verbatim Copy of CPC 2.0
cronology
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and traceback based on NCBI Pathogen Detection Project for Cronobacter.
gff2fasta
convert a gff file into fasta format
Perl-for-Bioinformatics
An attempt to help anyone interested in using Perl for Bioinformatics
SBEToolbox
SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.
SqueezeMeta
A complete pipeline for metagenomic analysis
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
biocoder's Repositories
biocoder/Perl-for-Bioinformatics
An attempt to help anyone interested in using Perl for Bioinformatics
biocoder/SBEToolbox
SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.
biocoder/cpc
Working copy of Coding Potential Calculator. Will serve as an archive.
biocoder/CPC2
Verbatim Copy of CPC 2.0
biocoder/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
biocoder/bettercallsal
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
biocoder/cronology
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and traceback based on NCBI Pathogen Detection Project for Cronobacter.
biocoder/gff2fasta
convert a gff file into fasta format
biocoder/SqueezeMeta
A complete pipeline for metagenomic analysis
biocoder/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
biocoder/bioconda-recipes
Conda recipes for the bioconda channel.
biocoder/fish-peco
peco select functions for fish shell
biocoder/McGregor-Genomics
Phasing and Genotyping McGregor Population.
biocoder/BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
biocoder/crotrait
A portable tool for in silico species identification, serotyping and multilocus sequence typing of Cronobacter genus
biocoder/DOQTL
QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)
biocoder/galaxy-hub
Galaxy Community Hub
biocoder/mtrna-seq
biocoder/Rocket.Chat.Integrations
Rocket.Chat Integrations
biocoder/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities